Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14368 1234 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 1193 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 937 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 926 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 795 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 736 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 715 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 578 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 536 / 2e-173 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 174 / 6e-47 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027273 [exp] 1958 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10030999 [exp] 1625 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10018904 [exp] 1004 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 955 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 944 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 943 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10039525 [exp] 791 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 786 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 773 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167500 [exp] 1333 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 969 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 960 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 838 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 809 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 790 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 746 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 744 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 558 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 492 / 4e-156 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10038991 pacid=23150544 polypeptide=Lus10038991 locus=Lus10038991.g ID=Lus10038991.BGIv1.0 annot-version=v1.0 ATGGCAGATTTTCCTACTTACCTTTCCAGTTCCGATCGCGACATCGACCAGGGGCTCATTGCTCTGAAGAAGGGCACTCAATTGATCAAATACAGCCGCA AAGGGAAACCCAAGTTCCGTGCCTTCAGACTCTCTCCGGACGAGACATCATTGATTTGGTTATCCCACGGACATGAAAAGAATCTGAAGCTATCTTCTGT ATCTCGAATCCTCCCCGGTCAAAGAACTGTTAGTGTTTCTTCTCATTGTTTTGCAGGGATTTCTCCATTGTGTATATATAACATTCTCTGTTCATCACAG CCTGTGTTTAGGAGATACTTGCGTCCTGAACAAGATTGTCTCTCATTTTCCCTCATTTACAACAACGGTGACAGATCTCTTGATCTGATCTGCAAAGACA AAGTTGAGGCAGAGGTTTGGCTTGCATGCCTTAAGGCCATTCTAGGGAGAAATCGGGATAGACGAACCACAAGTGATATTTCGGATCTAACTGCAGGTGG AGATTACTTTCGGCTTGGTCTAGACCTCGCACCAACCCTTGTTCAGGGTCGAGTCTCTATCGATGTACTTCCTCGCGATCTAGCTGGTGGCTCAGAGTAT GCAAATATGCAGCTAAGACCGAGTAACGTTGATGGTGGTATTCGGATTAGTGTTTCCAGCACTCCAAGTACCTTTAGTGTCGGATCCGGTGCGGATGACA TCGAATCATTAGGTGATGTTTACATGTGGGGCGATGTATGGAGTGGTGGCTTCTCCCCTGAAGTTCCCGTCGCCTCTCCTTCTTCGCGAATCGATATACT GGTTCCAAAACCTTTGGAATCAAACGTCGTTCTCGATGTTCATCAGATTGCTTGTGGGGAACGGCACGTCGCTCTTGTCACGAGACAAGGGGAGGTTTTC ACCTGGGGAGATGAATGTGGGGGTAGGCTCGGACACGGGGTCGAAAAAGACTTCAGCCGTCCTAGAGTTGTCGAGGTCCTCGCAGTTACTAACGTCGAAT TCGTGGCGTGTGGGGAGCAACACACTTGCGCGGTATCCTCATCGGGGGACTTGTTTACATGGGGGGATGGAAGCCATAACGCCGGACTTCTCGGCCATGG CAGTGATGTAAGCCACTGGATACCGAAAAGGGTATCCGGTGCTTTAGAAGGACTCCAAGTTCTGTCTATTGCTTGTGGCGCGTGGCATTCCGCTCTGGCA ACTTCGAGTGGGAAGTTATTCACTTTCGGAGACGGGGCATTTGGTGTTCTAGGCCACGGGGATCAAGAAAGTGTCGTGTTTCCGAAAGAAGTCCAGTTGT TGAGCGGGTTAAGGACCATGAAAGTTGCTTGCGGTGTATGGCATACCGCAGCTATAGTCGAGGTTATGGGACAACCCGGTGCGACCATGTCCTCGAGAAA GTTGTTCACTTGGGGCGATGGGGATAAATATCGACTCGGACATGGAAACAAAGAGACATATCTTCTTCCCACTTGTATATCGTCCCTTATTGACTACAAC TTTCATCAGTTAGCTTGTGGACATAACATGACAGTGGCACTTACTACCTCAGGCCATGTGTTTACAATGGGCAGCACTGCATATGGGCAGTTAGGAAATC CTAGCTCGGACGGGAAATCGCCTTGCTTAGTTCAAGACAGATTGGTTGGCGAGTTCGTCGAGGAAATCTCATGTGGCGATTTCCATGTCGCTGTGCTTAC TTCAAGAAGCGAAGTGTTCACTTGGGGGAAAGGTGGCAACGGAAGATTGGGACATGGAGATATAGAAGATAGGAAATCTCCAACGTTAGTTGAAGCGCTC AAGGACAAGCATGTGAAGAGTATATCGTGTGGTTCGAATTTTACGTCGAGCATATGTATTCATAAATGGGTTTCGGGAGCTGACCAGTCGGTGTGTTCGG GTTGTCGACAAGCGTTCGGGTTTACAAAGAAGAGGCACAACTGCTACAACTGTGGCCTGGTACATTGCCATTCTTGCAGCTCCAAAAAGGCCATGAGAGC TGCCTTAGCTCCCACACCGGGGAAGCCACATCGAGTATGCGATGCCTGCTACGCGAAACTCAAAGCCGGTGGTGATTCCGGTAACTCCGCTAACATGAAT AGGAAGCACACAACAACGCAGCATCCACGTCGGTCATCGGCAGACATGACTGCTAAAATTGATTTCGCCTTCCGCCCTTCGAAAGTTTTGTTATCTCCCA CTACCGAGCCTGTGAAGTACTTGGAGATAAGGCACGGGAAGCCAGGGACGAAATGCGACGATTCCTCGATAGTGCGAGCGTCTCAGGTTCCTGGACTGGT GCAGCTGAAAGATGTAGCATTTCCAAGCTCTCTCAGCGCTATACAAACTGCACTGAAGCCTACTCCTCTTCCTTCGTATCATTATCAACCGCCTATTAGT ATCACACCGCAGCCTCCCACTGGCTTGAGATCTTCTTCTCCGTACAGGAGACCGAGCCCTCCTCGATCTGTAGGCGGTGGAGTTTCGAGGAGTGTCATTG ACAGCCTCAGGAAGACTAATGAGATCATGAAGCAAGACATGTCAAAACTTCAAAGTCAAATCAAAGCATTGAAGCAAAAATGTGACACACAGGACAAGGC AAACCAGCAGCTTCAACAAGCAGCTAAAGAAGCTGCTTCATATGCTTCAGAAGAATCTTCTAAGCTTAGGATTGCTCGGGAAGTCGTAACTTCGATTACA GACCAGTTGAAAGAAGTGAGAAACCAACTGCCGCCTGAAGTGGAGGGTACTGAAGCATTGAAGGCCATTAATGCGAAAATCGAAGCTTTTCTAAGCGCAT ACGAACCATCTGAACTGCCGAAAAGCTTGGACTCTGAGATGAAGAATAATGAACAAGCGAATGCATCAGAACACAAGAAAGTGGAATCTGGACAAAGAAA TGAGGAGATTAGTGGTGAAAGTGACACCAAGATAAAGCTGGAGTCATCGTCGTCTAGGAAGGATAGTCAGAAAGAAATCATCGAACAATTCGAACCGGGA GTTTACGTGACATTCGTTCAACATCCGAACGGTATGAAGATGTTTAAACGAGTCAGATTCAGCAAAAGAAAGTTTCAGGAGCAGCAAGCAGAAGTATGGT GGAAGGAGAACAAAGAGCGGCTTCTTAAGCGATACCTTCCTCCGAAATCGGGATCGTCTTCGCATCATGCACCAGCTACTGCTACTGCAGCATCTGCTCC AACTGAATCTTCAACTAATCCAACTCCTCCTGTTGATCCTCAGGAAACAAGTGATGAGGCAGGGAAATCTGAAACTTAA
AA sequence Show only first row Show all	>Lus10038991 pacid=23150544 polypeptide=Lus10038991 locus=Lus10038991.g ID=Lus10038991.BGIv1.0 annot-version=v1.0 MADFPTYLSSSDRDIDQGLIALKKGTQLIKYSRKGKPKFRAFRLSPDETSLIWLSHGHEKNLKLSSVSRILPGQRTVSVSSHCFAGISPLCIYNILCSSQ PVFRRYLRPEQDCLSFSLIYNNGDRSLDLICKDKVEAEVWLACLKAILGRNRDRRTTSDISDLTAGGDYFRLGLDLAPTLVQGRVSIDVLPRDLAGGSEY ANMQLRPSNVDGGIRISVSSTPSTFSVGSGADDIESLGDVYMWGDVWSGGFSPEVPVASPSSRIDILVPKPLESNVVLDVHQIACGERHVALVTRQGEVF TWGDECGGRLGHGVEKDFSRPRVVEVLAVTNVEFVACGEQHTCAVSSSGDLFTWGDGSHNAGLLGHGSDVSHWIPKRVSGALEGLQVLSIACGAWHSALA TSSGKLFTFGDGAFGVLGHGDQESVVFPKEVQLLSGLRTMKVACGVWHTAAIVEVMGQPGATMSSRKLFTWGDGDKYRLGHGNKETYLLPTCISSLIDYN FHQLACGHNMTVALTTSGHVFTMGSTAYGQLGNPSSDGKSPCLVQDRLVGEFVEEISCGDFHVAVLTSRSEVFTWGKGGNGRLGHGDIEDRKSPTLVEAL KDKHVKSISCGSNFTSSICIHKWVSGADQSVCSGCRQAFGFTKKRHNCYNCGLVHCHSCSSKKAMRAALAPTPGKPHRVCDACYAKLKAGGDSGNSANMN RKHTTTQHPRRSSADMTAKIDFAFRPSKVLLSPTTEPVKYLEIRHGKPGTKCDDSSIVRASQVPGLVQLKDVAFPSSLSAIQTALKPTPLPSYHYQPPIS ITPQPPTGLRSSSPYRRPSPPRSVGGGVSRSVIDSLRKTNEIMKQDMSKLQSQIKALKQKCDTQDKANQQLQQAAKEAASYASEESSKLRIAREVVTSIT DQLKEVRNQLPPEVEGTEALKAINAKIEAFLSAYEPSELPKSLDSEMKNNEQANASEHKKVESGQRNEEISGESDTKIKLESSSSRKDSQKEIIEQFEPG VYVTFVQHPNGMKMFKRVRFSKRKFQEQQAEVWWKENKERLLKRYLPPKSGSSSHHAPATATAASAPTESSTNPTPPVDPQETSDEAGKSET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14368			Regulator of chromosome conden...		Lus10038991 [exp]	0	1
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10015374 [exp]	1.0	0.8762
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	6.5	0.8301
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	7.7	0.8270
					Lus10004437 [exp]	8.9	0.8270
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	10.0	0.8270
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	11.0	0.8270
					Lus10039674 [exp]	11.8	0.8270
					Lus10021739 [exp]	12.6	0.8270
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	13.4	0.8270
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	14.1	0.8270

Compare expression of checked genes

Lus10038991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.