Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41020 387 / 8e-131 WW domain-containing protein (.1.2) AT5G14610 42 / 0.0007 DEAD box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027285 [exp] 845 / 0 AT2G41020 427 / 1e-146 WW domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032200 [exp] 533 / 0 AT2G41020 410 / 2e-140 WW domain-containing protein (.1.2) Potri.010G170400 [exp] 45 / 8e-05 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.017G071400 [exp] 44 / 0.0003 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10038992 pacid=23150662 polypeptide=Lus10038992 locus=Lus10038992.g ID=Lus10038992.BGIv1.0 annot-version=v1.0 ATGGGCGAGGAGTTGGCTGCAGAGAACGATAATCGAGTCGTTCGAGTCTCCTTCAATGCCGCTGAAGCCGAGATTGAATCTGCTGCTCGGGAGGCGGTGC TTCGTGAACAAGAAATTGAGGCACAAAGAGTCATTCAAGCTCACAGAGATACAGGAGTTACAGCTGAATCTCCCAAGGATGGTGCTGACATTTTTGCTCA ACGCCTTGATCCTAATGCCCTAAAAGAACATCTATTGAAGATGACCACCGACCATCGTGCTGAAATGGCTTCAAAGCATGGGAAGCCTGGGGTTTCTGAA CAAGGTCATATGGAGATAGGGAATGGGTATGGTGTACCTGGTGGAGGCGCATATTATGGCTCTTCAAGGCCAGGATTTGATTATGAATCGAAACAGGAAT CCGCAGCTAAGGAGCTCCCTGAGGGTCTTAAACAGAGGTTAATGGCAAGGGGTGTCTTAAATGACAAGAAAGAGAAAGAACATCAGTTGGGAACTTATCA AAGTGAATCGAGGACCGTTTCAACACAGCATGCTGAGATGAAAAAGCTGCTTCCTGGATGGGCAGAAGCAAAAGATCCCACCACAGGTGTTTCTTATTAC TATAATGAAACCACTGGAATGAGCCAATGGGAGAGGCCTGTGGAAACATCTATACCCAAGCAGGCTCCTATGGCTTTCACTTTTACGGGAACATCTATAA CCAGTCAGGCTCCTTTAGCTTTCGCTCTTCCCGAAAACTGGGTGGAGGCGATGGATGAAACAACAGGGCACAAATATTACTTCAATACAAAAACCAATAT ATCACAATGGGAGCATCCTAATTCATCTGCTGCTGCTCCACAGCATGCTCCCATCACTGTCACTGTTAATGCTGGTGCAGGAACTTTAGGCAATCAGTCG GCTTATCAGACAAGATGTGCCGAATGTGGTGGTTGGGGAGTGGGCCTTGTGCAATCATGGGGTTACTGCAAACACTGTACCCGAGTTCTTAATCTTCCAC AGAGCCAGTACATAACTCCAAACTACCAGCAGCAGACTATCAATGTTGGGAATTCTAACGGCAATCATAATAAGGGTGCAGAAAAGAGGCCAAATGGAAG ACCTCCTATGGGTAAAGGAAACAAAAAGGAGAGCAGAAAACGTTCCCATGCCGATGACGATGAGCTAGATCCCATGGATCCAAGCGCTTATTCCGATGCT CCTCGAGGCGGCTGGGTTGTGGGCTTAAAAGGGGTGCAGCCAAGAGCAGCCGATACGACTGCCACGGGTCCTCTTTTCCAGCAACGCCCTTATCCATCAC CTGGAGCCGTGTTGCGGAAGAATGCAGAGGCTTCATCGCAATCGAAGAAGCCGGGCTCTCAGTACGCTCCGATATCGAAGAAAGGCGATGGTAGTGACGG TCTGGGTCAGGCTGATTGA
AA sequence Show only first row Show all	>Lus10038992 pacid=23150662 polypeptide=Lus10038992 locus=Lus10038992.g ID=Lus10038992.BGIv1.0 annot-version=v1.0 MGEELAAENDNRVVRVSFNAAEAEIESAAREAVLREQEIEAQRVIQAHRDTGVTAESPKDGADIFAQRLDPNALKEHLLKMTTDHRAEMASKHGKPGVSE QGHMEIGNGYGVPGGGAYYGSSRPGFDYESKQESAAKELPEGLKQRLMARGVLNDKKEKEHQLGTYQSESRTVSTQHAEMKKLLPGWAEAKDPTTGVSYY YNETTGMSQWERPVETSIPKQAPMAFTFTGTSITSQAPLAFALPENWVEAMDETTGHKYYFNTKTNISQWEHPNSSAAAPQHAPITVTVNAGAGTLGNQS AYQTRCAECGGWGVGLVQSWGYCKHCTRVLNLPQSQYITPNYQQQTINVGNSNGNHNKGAEKRPNGRPPMGKGNKKESRKRSHADDDELDPMDPSAYSDA PRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEASSQSKKPGSQYAPISKKGDGSDGLGQAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41020			WW domain-containing protein (...		Lus10038992 [exp]	0	1
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	15.4	0.8389
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	16.1	0.8335
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	19.5	0.8165
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	26.1	0.8169
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	31.5	0.8044
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	34.9	0.8017
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	35.2	0.8110
AT1G29220			transcriptional regulator fami...		Lus10029236 [exp]	40.7	0.7399
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	48.6	0.8000
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	59.1	0.7812

Compare expression of checked genes

Lus10038992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.