Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56640 1191 / 0 SEC15A exocyst complex component sec15A (.1) AT4G02350 727 / 0 SEC15B exocyst complex component sec15B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027288 [exp] 1537 / 0 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10010439 [exp] 1323 / 0 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1) Lus10009856 [exp] 462 / 7e-154 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1) Lus10010296 [exp] 386 / 5e-128 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1) Lus10010295 [exp] 302 / 3e-95 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1) Lus10009857 [exp] 58 / 4e-10 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032100 [exp] 1280 / 0 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.006G034200 [exp] 1266 / 0 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1) Potri.002G203200 [exp] 780 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 775 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04091 [flax] [poplar] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Lus10038993 pacid=23150447 polypeptide=Lus10038993 locus=Lus10038993.g ID=Lus10038993.BGIv1.0 annot-version=v1.0 ATGGATGCAAAACCAAAGAGGAGAGCAGTTGTGGAGAATGGGGATACTGGTGGGGAGGACTCGGTCCTTGCAACTTTAATCGGCAATGGGGATGATCTAG GTCCTATCGTCAGGCACGCATTTGATGTGAATCGTCCTGAAGCTCTCGTGCAGCAGCTGAAAGCCGTTGTAAAGAAGAAAGAATTTGAAATCGAGGAGCT TTGTAAGAGCCACTACGAAGAATTCATCCTTGCGGTTGACGAGCTTCGTGGTGTCCTGGTCGACGCCGAAGATCTGAAAGGCGAGCTCTCGAGCGATAAT TTGAAGCTGCAGGAAGTTGGGAGTTCTCTTCTGATCAAACTGGAGGAGCTTCTTGAATCGTATTCGATTAGGAAGAACGTGACTGAAGCTGTGAGAATGT CCAAGGCTTGTGTTCAGGTCTTGGAGCTCTGTGTGAAATGCAACAACCACATGGCCGATGGTAATTTCTACCCGGCGTTGAAGAACTTGGATTTGATTGA GAAGAATTACTTGAAGAACATTCCCGTGGGGTCGCTTAAAATGGTGGTAGGGAAGACGATTCCGGTCATCAAATCGCATATCGAGAAGAAAGTCACCAGT CAGTTCAACGAATGGCTTGTCCACGTCAGGAGCTCTGCAAAGACCATCGGCCAGACCGCGATAAGCCAGTCTGCATCGGCACGCCAGAGAGACGAAGAGA TGCTCGAACGACAGAGGAAATCCGAGGAGCAGAACGTTTCAGGTTTATTAGGAGATTTCGCATTCACTCTAGATGTCGAAGAAATCGACGAAGATTCTGT TCTACAGTTCGACATCACACCGCTGTACCGAGCCTATCATATCCACGCTTGCCTCGGAATCCAAGATCAGTTCCGTGACTACTACTACAAGAATCGGGTT TTACAGCTGCATTCGGATTTGCAGATCTCGTATGGGCAGCCTTTTATAGAATCTTACCAGACCTATTTGGCTCAGATTGCTGGGTACTTCATCGTGGAGG ATCGAGTCTTGAGGACCGCGAGCGGTGTTCTATCTTCGGATCAGGTCGAAGCTATGTGGGAAACAGCTAAGAACAAAGTGACATCTCTTTTGGATGATCA GTTCAACAACCATACGGATTCAGCTACTCATCTCCTCCTTGTGAAGGATTACGTCACTCTTCTTGCGGAGACTCTTCGAACATATGGCTATGACTCGAGG CAGATCCTGGAGGCTCTCGACAAAGGCCGAGAGAAATATCACGACCTTCTCCTGCAGGAATGTCGCGAGCAGATTATCAGCGCTCTCGGAAACGACACTT ACGAGCAAATGGTGATGAAGAAGGATACTGATTACGAGAACAATGTCCTCATATTCGAGCTCCAGACGTCAGATATTATGCCTGCTTTTCCGTATATTGC GCCGTTCTCATCCATGGTGCCCGATACTTGCCGGATCGTTCGGTCGTTCATCAAGGGATCGGTGGATTACCTGTCGTACGGTATGCATACGAATATCTAC GATCTTGTGAGGAAGTATTCGGACAAGTTACTAATCGATGTTTTGAACGAAGTCGTGCTGAGTACAATCAATAGCAGTGCGATTGGGGTTTCACAAGCGA TGCAGATTGCAGCGAACATATCGGTTCTCGAAAGAGCCTGCGAGTTCTTCACTCGCCATGCGGCCCAACTATGTGGAATTCCGGTCCGATCGGTTGAGAG GCCGCAGGCTACTTTGACTGCGAAGGTGATCTTGAAAACCTCAAGGGATGAAGCTTACCTTTCCCTGCTAGCTTTAGTGAACGCCAAGCTGGAAGAGTTC ATGTCACTTGCGGAAAACATCAACTGGACTTCCGAGGAGACGCCTCAGATCGGAAACGAGTACATGAACGAGGTGGTGATTTATCTCGACACTGTTTTAT CGACAGCGCAGCAGATTTTACCCATGGATGCTCTGTTCAAAGTCGGATGTGGTGCACTGGAGCACATTTCAAGCTCGATTGTCGCAGCGTTTCTCAGCGA CAGTGTGAAGCGGTTCAATGCCAATGCGGTCCTGTCCCTCAACTATGATCTGAAAATGGTGGAGAATTTCGCCGAGGAGAGGTTCCATACGAGCGGTCTG AGCGAGATATACAAGGGAGGTAGTTTCAAAGCGTGTTTGGTGGAAGCGCGGCAGCTGATTAATCTCCTGTCGAGCAGCCAGCCGGAGAACTTCATGAATC CTGTGATTAGGGAGAGGAGCTATAACAGTTTGGACTATAAGAAGGTGGCTACAATTTGTGACAAGTTCAAGGACTCTACTGATTCGATTTTCGGTAGTCT TTCTAACAGAAATGCAAAGCAGAGCGCGAAGAAGAAGTCGATCGATGTGCTGAAGAAGAGATTGAAGGACTTCAATTGA
AA sequence Show only first row Show all	>Lus10038993 pacid=23150447 polypeptide=Lus10038993 locus=Lus10038993.g ID=Lus10038993.BGIv1.0 annot-version=v1.0 MDAKPKRRAVVENGDTGGEDSVLATLIGNGDDLGPIVRHAFDVNRPEALVQQLKAVVKKKEFEIEELCKSHYEEFILAVDELRGVLVDAEDLKGELSSDN LKLQEVGSSLLIKLEELLESYSIRKNVTEAVRMSKACVQVLELCVKCNNHMADGNFYPALKNLDLIEKNYLKNIPVGSLKMVVGKTIPVIKSHIEKKVTS QFNEWLVHVRSSAKTIGQTAISQSASARQRDEEMLERQRKSEEQNVSGLLGDFAFTLDVEEIDEDSVLQFDITPLYRAYHIHACLGIQDQFRDYYYKNRV LQLHSDLQISYGQPFIESYQTYLAQIAGYFIVEDRVLRTASGVLSSDQVEAMWETAKNKVTSLLDDQFNNHTDSATHLLLVKDYVTLLAETLRTYGYDSR QILEALDKGREKYHDLLLQECREQIISALGNDTYEQMVMKKDTDYENNVLIFELQTSDIMPAFPYIAPFSSMVPDTCRIVRSFIKGSVDYLSYGMHTNIY DLVRKYSDKLLIDVLNEVVLSTINSSAIGVSQAMQIAANISVLERACEFFTRHAAQLCGIPVRSVERPQATLTAKVILKTSRDEAYLSLLALVNAKLEEF MSLAENINWTSEETPQIGNEYMNEVVIYLDTVLSTAQQILPMDALFKVGCGALEHISSSIVAAFLSDSVKRFNANAVLSLNYDLKMVENFAEERFHTSGL SEIYKGGSFKACLVEARQLINLLSSSQPENFMNPVIRERSYNSLDYKKVATICDKFKDSTDSIFGSLSNRNAKQSAKKKSIDVLKKRLKDFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	0	1
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	2.4	0.8435
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	4.4	0.8612
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	8.8	0.8407
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	12.4	0.8016
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	13.0	0.8364
AT1G35660			unknown protein		Lus10006047 [exp]	14.1	0.8176
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	16.6	0.8267
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	17.3	0.8352
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	18.5	0.8247
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	19.0	0.8011

Compare expression of checked genes

Lus10038993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.