Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40930 1140 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 740 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 733 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 698 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT5G22030 618 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT5G46740 92 / 2e-18 UBP21 ubiquitin-specific protease 21 (.1) AT5G10790 90 / 4e-18 UBP22 ubiquitin-specific protease 22 (.1) AT4G31670 85 / 2e-16 UBP18 ubiquitin-specific protease 18 (.1) AT4G17895 85 / 3e-16 UBP20 ubiquitin-specific protease 20 (.1) AT2G24640 82 / 8e-16 UBP19 ubiquitin-specific protease 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027289 [exp] 1721 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10033243 [exp] 726 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 724 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 708 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10013369 [exp] 650 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 622 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 589 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 577 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008276 [exp] 498 / 1e-158 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033800 [exp] 1303 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 1284 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 764 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 748 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G214800 [exp] 656 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 594 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 146 / 2e-37 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G123200 [exp] 99 / 5e-21 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 97 / 2e-20 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 95 / 1e-19 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10038994 pacid=23150442 polypeptide=Lus10038994 locus=Lus10038994.g ID=Lus10038994.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTGTCGATGTGTAACGGTGCTGCAGCGGAGCTGTCTCCGGAGGAAGAGAGGGTTTTGATTCGTGATATTGCCCTCGCCGCCGAAGCCAACA GCAAAGAAGGAGACGATTTTTTCTTAATTACCCAAAGATGGTGGCAGCATTGGATTGAATATGTGAACCAAGACCAACAAAATAGTACCAATGACGGGTC CTCAACGTTGGAGCATTCTGACTCTGCGAGTTGTTCGAAGCGGCCTGCTGTTATTGACAACTCTGATCTAGTACATGATCCAGCATCTAATGATGGTAAT GCTGTTGTTGAGATTCCTGATAGTTTATTGGAGGGTCGTGATTACGTTCTTCTTCCACAGGAAGTCTGGAATCAGCTATTTTCATGGTATGGAGGTGGTC CACCATTGGCACGCAAAGTAATCAGTTCAGGCCTTTCTCATACAGAATTAGCTGTGGAAGAAACTATAGGAGAGCTGCATAGGAAAGCTTGTGAGATCTT TGATCTCAACACAGACCAAGTATGCATATGGGATTACTATGGTCAGCGGAAACATGCTTTGATGAATGACATGGATAAGACACTCGATGATGCTAACATA CAGATGGATCAGGATATTCTCGTGGAGGTTGTTAGCAATGTCAATGGTACTACATTGAATGGTTCTAGGAGTTCTGTTATCAACAATGGATCTGTCAAGA AGGAAGCTACTTCTATTCTTTTAGAGCCTTCTAAGTCAAGGTTATCAATTGCAGGAGGTTTCTCTGCTAGTAAAGGTGCATCTAAAAGCTGTGGCACGGA GTTCTCACAAGCTCAGAACATGACATCGACCGGTAGAGAGTTGGATAATACATACGGGATCGGTGGGGTTAGTACAAGGGGCTCTAATGGTGGTCTTACC GGGTTGCAGAACCTAGGCAACACATGCTTTATGAATAGTGCAATACAGTGCCTTGTTCATACGCCTGAATTTGCTAAATATTTCCGAGAGGATTACCGTC AAGAGATAAACTGGCAAAATCCCTTCGGTATGGTGGGGGAGCTAGCCTTGGCATTTGGTGATTTACTGCGGAAGCTCTGGGCACCTGGACGAACACCAGT TGCTCCTCGTCCATTCAAAGCAAAACTTGCTCGGTTTGCTCCTCAGTTTAGTGGCTACAATCAACATGATTCTCAGGAACTTCTAGCTTTCCTGCTAGAT GGTCTTCATGAAGATCTGAATCGTGTTAAACAAAAGCCATATATAAAGTCTAGAGATGCTGATGGGCGTCCAGATGAGGAAGTTGCTGATGAGTACTGGG CAAATCACATTGCCCGGAATGATTCTATAATTGTTGATGTGTGCCAGGGCCAGTACAAGTCAACTTTGGTGTGTCCAGTGTGCAATAAAATATCAGTGAC ATTCGATCCCTTCATGTACCTTTCCTTGCCACTCCAATCTGCCACCACCCGTTCTATGACAGTAACAGTTTTTGCCTGTGATGGGAGTTCCTTGCCATCT CTCTGCACTGTGTCTGTCCCAAAGCATGGATGGTGCAGAGATTTGATCAATGCCATTAGTACTGCTTGTTCCCTGAAGAGCAACAAAGAGATTAAACTTG CCGAGGTACGCAATCATCAGTTCCAAAGATTTCTAGATGACCCGGTTATGTCTTTGTCTGCTATCAAAGACGACGACCGCCTTGTTGCCTATAAGATTGC AAAGTCATCAAAACACTTGCTTCTCCAGTTGACTCATCGACGTAAACAGCAGGAAGCAGGAAAAAATGGCTCGTCGCTTCAGTGGAATGCATTTGGAACT CCTGTCATTACATCCATTTCGTACGAAGATGTCCTCGCAGGAGAAGATGTACAGAGAGAAGTTCAAAAGATTCTTTTACCATGGTTAAGCGGGGAAGCAA CAGAGGATTCTGGTAATGGCACTCCTGATGAAGTTTGTACCGATCACGTAACAGATTCAGTAAAGAGCAATGGTTTTGCTTCGAGGTCATTGTCATCCTT AAAAATTTCTCTACAATTTGGCGACGGGAATGGTGAATTGATTGATCTCTCTGCGAAAGAAGGGAAATCCATCACAGTGAGCCAATCATCAACCTTGGCA TTGGTATATGTTGATTGGTCACTAGATCTCATATCAAAATGCAATGCTAAGTTCTTTGAGAACTTGCCTGAAGTCTTCAAGTTTGGACCTGTGAGTAAGA AGGCTCGTAATGAGCCCCTCTCCTTGTACACTTGTCTGGAAGCTTTCCTACGCGAGGAACCCTTGGTTCCTGAGGACATGTGGTACTGTCCACAATGCAA AGAACGACGGCAAGCGAGTAAGAAGCTTGATTTATGGAGGCTTCCAGAGGTGCTGGTGATCCATTTGAAGCGGTTCTCATACAGTAGATCTATGAAACAC AAACTAGAAACCTTTGTTAACTTCCCAATACGTGATTTTGATTTGACAAACTACGTGGGCAACAAGAACAGCACCCGTCGTCAACTCTATGAACTATATG CCCTGACCAATCATTATGGTGGCATGGGAAGTGGGCATTACACTGCGCACATCAAGCTTTTGGAAGAAAACAAATGGTACAACTTCGACGACAGCCATAT ATCGCTTATTAACGAGGATGATGTCAAATCAGCTGCTGCTTACGTTCTGTTTTACACACTTGCTTCTCCAGTTGACTCATCGACGGAAGCAGGAAAAAAT GGCTCGTCGCTTCAGTGGAAGGCATTTGGAACTCCTGTCATTACATCCATTTCGTACGAAGATGTCCTCGCAGGAGAAGATGTACAGAGAGAAGTTCAAA AGATTCTTTTACCATGGTTAAGCGGGGAAGCAACAGAGGATTCTGGTAATGGCACTCCTGATGAAGTTTGTACCGATCACGTAACAGATTCAGTAAAGAG CAATGGTTTTGCTTCCAAGTCATTATCATCCTTAAAAATTTCTCTACAATTTGGCGACGGGAATGGTGAATTGATTGATCTCTCTGCGAAAGAAGGGAAA TCCATCACAGTGAGCCAATCATCAACCTTGGCATTGGTATATGTTGATTGGTCACTAGATCTCATATCAAAATGCAATGCTAAGTTCTTTGAGAACTTGC CTGAAGTCTTCAAGTTTGGACCTGTGAGTAAGAAGGCTCGTAATGAGCCCCTCTCCTTGTACACTTGTCTGGAAGCTTTCCTACGCGAGGAACCCTTGGT TCCTGAGGACATGTGGTACTGTCCACAATGCAAAGAACGACGGCAAGCGAGTAAGAAGCTTGATTTATGGAGGCTTCCAGAGGTGCTGGTGATCCATTTG AAGCGGTTCTCATACAGTAGATCTATGAAACACAAACTAGAAACCTTTGTTAACTTCCCAATACGTGATTTTGATTTGACAAACTACGTGGGCAACAAGA ACAGCACCCGTCGTCAACTCTATGAACTATATGCCCTGACCAATCATTATGGTGGCATGGGAAGTGGGCATTACACTGCGCACATCAAGCTTTTGGAAGA AAACAAATGGTACAACTTCGACGACAGCCATATATCGCTTATTAACGAGGATGATGTCAAATCAGCTGCTGCTTACGTTCTGTTTTACCGGAGGGTGAGA AGTAACAATGTGGCTACAAGCAACGGAGAACTTTCCGGTATAGCGCATAATGACAATGGTTTAATCCGCAAGGCGCATCAGCTGCTGGGGTTATACGCTG CTGTTTTGGGGACTTTGGATGGTCCCTTCATTTTCTTTGTCAACAGTGTATCATATCTATATGACTTGTACGAGCTTCATCTAACAGTAGAGGATGTAAA ATCTGGAGTTCAGATCTCACAAGTGACAAGGAAAGACAAAATGAATCTTGTTGGAGTTCAGTAG
AA sequence Show only first row Show all	>Lus10038994 pacid=23150442 polypeptide=Lus10038994 locus=Lus10038994.g ID=Lus10038994.BGIv1.0 annot-version=v1.0 MAEVSMCNGAAAELSPEEERVLIRDIALAAEANSKEGDDFFLITQRWWQHWIEYVNQDQQNSTNDGSSTLEHSDSASCSKRPAVIDNSDLVHDPASNDGN AVVEIPDSLLEGRDYVLLPQEVWNQLFSWYGGGPPLARKVISSGLSHTELAVEETIGELHRKACEIFDLNTDQVCIWDYYGQRKHALMNDMDKTLDDANI QMDQDILVEVVSNVNGTTLNGSRSSVINNGSVKKEATSILLEPSKSRLSIAGGFSASKGASKSCGTEFSQAQNMTSTGRELDNTYGIGGVSTRGSNGGLT GLQNLGNTCFMNSAIQCLVHTPEFAKYFREDYRQEINWQNPFGMVGELALAFGDLLRKLWAPGRTPVAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLD GLHEDLNRVKQKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKISVTFDPFMYLSLPLQSATTRSMTVTVFACDGSSLPS LCTVSVPKHGWCRDLINAISTACSLKSNKEIKLAEVRNHQFQRFLDDPVMSLSAIKDDDRLVAYKIAKSSKHLLLQLTHRRKQQEAGKNGSSLQWNAFGT PVITSISYEDVLAGEDVQREVQKILLPWLSGEATEDSGNGTPDEVCTDHVTDSVKSNGFASRSLSSLKISLQFGDGNGELIDLSAKEGKSITVSQSSTLA LVYVDWSLDLISKCNAKFFENLPEVFKFGPVSKKARNEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH KLETFVNFPIRDFDLTNYVGNKNSTRRQLYELYALTNHYGGMGSGHYTAHIKLLEENKWYNFDDSHISLINEDDVKSAAAYVLFYTLASPVDSSTEAGKN GSSLQWKAFGTPVITSISYEDVLAGEDVQREVQKILLPWLSGEATEDSGNGTPDEVCTDHVTDSVKSNGFASKSLSSLKISLQFGDGNGELIDLSAKEGK SITVSQSSTLALVYVDWSLDLISKCNAKFFENLPEVFKFGPVSKKARNEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHL KRFSYSRSMKHKLETFVNFPIRDFDLTNYVGNKNSTRRQLYELYALTNHYGGMGSGHYTAHIKLLEENKWYNFDDSHISLINEDDVKSAAAYVLFYRRVR SNNVATSNGELSGIAHNDNGLIRKAHQLLGLYAAVLGTLDGPFIFFVNSVSYLYDLYELHLTVEDVKSGVQISQVTRKDKMNLVGVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	0	1
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	3.0	0.8439
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	4.5	0.8066
AT1G21610			wound-responsive family protei...		Lus10000853 [exp]	4.6	0.8126
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	7.2	0.8131
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	10.1	0.7341
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	12.1	0.7980
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	13.9	0.7983
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	18.5	0.7911
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	20.2	0.7930
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10014601 [exp]	21.6	0.7474

Compare expression of checked genes

Lus10038994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.