Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40950 384 / 3e-123 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 313 / 2e-97 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT5G11260 50 / 9e-07 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 48 / 2e-06 bZIP HYH HY5-homolog (.1.2.3.4) AT2G04038 44 / 8e-05 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT2G18160 44 / 0.0001 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT2G42380 45 / 0.0002 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G13600 44 / 0.0002 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G49450 42 / 0.0003 bZIP ATBZIP1 basic leucine-zipper 1 (.1) AT3G58120 43 / 0.0005 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027290 [exp] 1188 / 0 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 578 / 0 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 558 / 0 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 54 / 4e-08 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002900 [exp] 53 / 1e-07 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10024279 [exp] 49 / 3e-06 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10013059 [exp] 45 / 0.0001 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10037750 [exp] 43 / 0.0001 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10002185 [exp] 44 / 0.0002 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032400 [exp] 509 / 2e-171 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G034500 [exp] 465 / 7e-154 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.018G029500 [exp] 54 / 3e-08 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 54 / 1e-07 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.006G251800 [exp] 50 / 7e-07 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 47 / 3e-05 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G018400 [exp] 44 / 9e-05 AT4G35900 133 / 5e-38 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G257900 [exp] 45 / 0.0001 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.013G091400 [exp] 45 / 0.0001 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G006900 [exp] 44 / 0.0001 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10038995 pacid=23150522 polypeptide=Lus10038995 locus=Lus10038995.g ID=Lus10038995.BGIv1.0 annot-version=v1.0 ATGGCGGATTCCACCGCTGCCTTCGCTGACGCAAACCCTCCTACGCAACCTGTCTCCTTCGCCGATCCTCTCCAAACGCCTCCCCTCGACCCTCTCTTTT TCTCTTCAGACCCCGACCACGACTTCATCAACGATCTCACCTTCCATTTCGATTTGGACGACCTCGACCCCCAGTACTTCCTTCCCGATACCGGCGACTC CTTCCTTCTTCCCGACTCCACCACCGATCACGCCGATTTCGGCTCTGACTTGCCTGAGCATGATGGATCGCTGCAAGATTTCTGCTTCGATCGCGGGAAT AATAATCGAGTACATGTAGAGTCGGAAAATTCCGTGATTTCTAGGGATGGCTGCTCTTATGTTGTTGGGAAGTATTTTAACTCGTCGCCTTCTCAGACTA GGAGCTTCGATTCTCATGAGAGGATCATTTCTTCTGCTCCTGCTGCTGTCACGATTGTGAATTCTTCTGCTGCTTTCCCTGTATCGTCACACGGTTCTGG AGATGGGGCTTCTGGAGTTTCGGAGACCATGAATGTGCCTTCTCCTGATTCGAAGAGTTATCCTCATAGCTTGACTAAGCTGGAAAATGAAGAAGCGAAT GGGAAAAGTAAGAGGAAAAAGGAGCTCAGTGATGATACGATCGAAGAGACCACCAGAAGGCAGAAATGTAAGGTATTTGAGACTCCTAGTAACTCAAACC CCAAGGGTGAAACTGCTGATTGTGGCGGTGACGAAGACGAGAAGAAGAAGGCTAGGCTGATGAGAAACCGGGAGAGCGCGCAGCTGTCGAGGCAGAGGAA GAAGCACTACGTGGACGAGCTGGAAGAAAAGGTGAGAGCTATGAATTCCATTATTGCTGACTTGAATGGGAGGGTATCATATTTCATGGCTGAAAATGCT ACCTTGAGGCAGCAATTGGTGGGTGGGACGCCTATGTATCCACCTCCTCCAATCCATTATCTATGGATGCCTCCTGGTGCTCCTTATCTTGTTCAGGGTT CGAAGGTTCCTTTGGTTCCGATTCCTAGGCTGAAACCACAACAGCCTGCTGCTTCTACCAAATCCAAGAAAGGAGAGACCAAAAATCCTGGAATTAGAAC TAAGAAAGTTGCTAGTGTTAGTTTTATCGGTTTGCTGTGTTTCATTTTGATGTTTGGTGGGTTGGTGCCGCTTATTAATGTGAAGTATGGAGGGCCAGGA GAGAATGTTGCCGAGGGCAATAGGTTTTCTGATCAGCACTTTCCCGGGAAGGTCTTGGTAGTTCACGGACATTCTAATATATCCAGTGGGAAAACGGGCG TTGGATTCTCCGGTGACACAATCGGTAAAATGCAGTGTCAAAAGGCTAAGAATGGGTGTGATAATTCAAGCGAGCATCTTCATGCGTCTTTGTATGTCCC CCGGAACGATAGGCTTGTGAAGATTGATGGGAATTTGATAATCCAGTCTGTTCTGGCAAGTGAGAGAACAAAGGGAGATGCTTCTGAAGCGACAGGTTTA GCAATAGCAAACCAGTTGTCGGGTGCTCTGGCCATCCCTGAAGGAACCATCAGAGGGAAGCCCTACCGTTCTCATGCCGAACAACAAAAGGCCATCGGTT CAAGATCAGCTGATAAATTGGAGGAGCAATTCAAGTCTTCTGCAGCTGATGGTAAATTACAGCAATGGTTCCACCAAGGTCTTGCAGGTCCAATACTGAG TTCTGGTGTCTGCAGTGAAGTGTTCCAATTCGACATGACTCCATCTCGAGGTGCCATTGTCGCCGCTTCATCAGTTACTAATCTTACAAGAGAAGGGCGG CAGCAAAGAGCAAGTCCCCCCGAGAAGAAGAAACACAGAAGGATTCTCCATGCCCTTCCTGTTCCCTTTCCAACATCGAATCTGAACGTCACTGGAGAAC GCAAAGGGATAAATAACGGGACGACCTACGATGTCCAACGAAGCTCTTCTTCGATGGTTGTCTCTGTGCTTGTCGACCCGAGAGAAGTGGGCAATAGTGA AGTTGATGGCATGATTGTTCAAAAGTCCCTCTCGCGTGTTTTCATCGTGTTTCTAGTCGATGGTGTCAAGTATGTTACTTATTCGTGTGTACTTCCACGC TCTACTCCTCATTTGGTACGAGCTTGA
AA sequence Show only first row Show all	>Lus10038995 pacid=23150522 polypeptide=Lus10038995 locus=Lus10038995.g ID=Lus10038995.BGIv1.0 annot-version=v1.0 MADSTAAFADANPPTQPVSFADPLQTPPLDPLFFSSDPDHDFINDLTFHFDLDDLDPQYFLPDTGDSFLLPDSTTDHADFGSDLPEHDGSLQDFCFDRGN NNRVHVESENSVISRDGCSYVVGKYFNSSPSQTRSFDSHERIISSAPAAVTIVNSSAAFPVSSHGSGDGASGVSETMNVPSPDSKSYPHSLTKLENEEAN GKSKRKKELSDDTIEETTRRQKCKVFETPSNSNPKGETADCGGDEDEKKKARLMRNRESAQLSRQRKKHYVDELEEKVRAMNSIIADLNGRVSYFMAENA TLRQQLVGGTPMYPPPPIHYLWMPPGAPYLVQGSKVPLVPIPRLKPQQPAASTKSKKGETKNPGIRTKKVASVSFIGLLCFILMFGGLVPLINVKYGGPG ENVAEGNRFSDQHFPGKVLVVHGHSNISSGKTGVGFSGDTIGKMQCQKAKNGCDNSSEHLHASLYVPRNDRLVKIDGNLIIQSVLASERTKGDASEATGL AIANQLSGALAIPEGTIRGKPYRSHAEQQKAIGSRSADKLEEQFKSSAADGKLQQWFHQGLAGPILSSGVCSEVFQFDMTPSRGAIVAASSVTNLTREGR QQRASPPEKKKHRRILHALPVPFPTSNLNVTGERKGINNGTTYDVQRSSSSMVVSVLVDPREVGNSEVDGMIVQKSLSRVFIVFLVDGVKYVTYSCVLPR STPHLVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	2.4	0.7635
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	7.7	0.7616
AT1G19310			RING/U-box superfamily protein...		Lus10010791 [exp]	10.6	0.7427
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	11.2	0.7708
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10028118 [exp]	11.8	0.6760
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	17.4	0.7567
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	18.8	0.7399
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	21.0	0.7346
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	27.1	0.7011
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	28.6	0.7252

Compare expression of checked genes

Lus10038995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.