Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56680 291 / 5e-97 Single-stranded nucleic acid binding R3H protein (.1) AT2G40960 274 / 3e-90 Single-stranded nucleic acid binding R3H protein (.1) AT3G10770 219 / 3e-69 Single-stranded nucleic acid binding R3H protein (.1.2) AT5G05100 219 / 5e-69 Single-stranded nucleic acid binding R3H protein (.1) AT5G33406 59 / 2e-09 hAT dimerisation domain-containing protein / transposase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027292 [exp] 639 / 0 AT3G56680 329 / 8e-112 Single-stranded nucleic acid binding R3H protein (.1) Lus10034141 [exp] 145 / 2e-39 AT3G56680 177 / 3e-51 Single-stranded nucleic acid binding R3H protein (.1) Lus10043439 [exp] 145 / 4e-39 AT3G56680 178 / 3e-51 Single-stranded nucleic acid binding R3H protein (.1) Lus10019158 [exp] 49 / 4e-06 ND 40 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032500 [exp] 456 / 1e-161 AT3G56680 375 / 1e-129 Single-stranded nucleic acid binding R3H protein (.1) Potri.006G034700 [exp] 455 / 3e-161 AT3G56680 383 / 8e-133 Single-stranded nucleic acid binding R3H protein (.1) Potri.008G021900 [exp] 166 / 4e-47 AT3G56680 192 / 4e-57 Single-stranded nucleic acid binding R3H protein (.1) Potri.010G237500 [exp] 150 / 3e-41 AT3G56680 171 / 4e-49 Single-stranded nucleic acid binding R3H protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038997 pacid=23150280 polypeptide=Lus10038997 locus=Lus10038997.g ID=Lus10038997.BGIv1.0 annot-version=v1.0 ATGGATTCTTCCGCCGCCGTCCAGCCTCAGGCTTCTTCAGCTATCCAGGTCGATTCTTTCCTGCTCGAGGCTCTCCAGAATCCTCGCCACCGTCTCACCA TTCTAAGGATGGAACTTGACATCCAGAGATTTCTACAGACTGCTGAGCAAAAGCAGTTCGAATTTCAGCATTTCCCAACTTCATACCTTAGGCTTGCAGC CCATCGAGTTGCTCAGCACTATGGGTTGGTGACGATGGTCCAGGACAATGGAGTAGATGGTCAAGTAAACAAGATTGTGGCTTTAAAAACACCAGAAATC AGATACCCTTCTGTCCGCTTATCCGACATTCCTGCTAAACAGTTGGATGGTGACATACCTGAGAAGGTTAAGATTGCCATTAGGCCTCGGCCTAACCAAG GATCTACAGATCAGTCTAATGAATTTGGAGCCAAACGAAATCATATCAGGAGTGTTGAAGAGAGGAAGGAGGAGTATGATAGGGCAAGAGCTCGTATATT CAGTAGTCCCAACAGTCCGAACTCAGATGATGCATTGTCACAAGGCCCAACAGAGAAGGGAGTTATATCGCCAAGCAAGGATGAGGCTGAAAGTTGGAGG AACTCTATGGTTGATCCTATCAACATCAGGGATTGTTCTTCGTCTCGGGTCGCGATCTTTAGGGACAGGGAGAAAGATCGTTATGATCCAGACTATGACC GCAGTTATGACAGGTATGTTAGAGGTGCTCTTGGCAACCAAAGCTTCAACATGCTACCAGTTAATGTCCAGAAGATGCAGGTTCCATTCATTCAGTATTA TCCCGGGTTCCCCCAATCAGTTCAGATGCCAAGGAATCAAAGTTCATATGGGTACATGCCTGCTGCAACCCCAGTTTTCAATCCCTACTGTGCTGTAGGA ATGAACCAAACATCGCAGGATGCAGCATATGCACAGTGGCCAAGTCCGTCTATGATGTATGCACATTCATATGATCAATTTAGGCATGCCGTCTTCCAGG CTCCATTCTGTCAACAGCCCCTGACGTTTGACTACGGTCAAAACCATTAA
AA sequence Show only first row Show all	>Lus10038997 pacid=23150280 polypeptide=Lus10038997 locus=Lus10038997.g ID=Lus10038997.BGIv1.0 annot-version=v1.0 MDSSAAVQPQASSAIQVDSFLLEALQNPRHRLTILRMELDIQRFLQTAEQKQFEFQHFPTSYLRLAAHRVAQHYGLVTMVQDNGVDGQVNKIVALKTPEI RYPSVRLSDIPAKQLDGDIPEKVKIAIRPRPNQGSTDQSNEFGAKRNHIRSVEERKEEYDRARARIFSSPNSPNSDDALSQGPTEKGVISPSKDEAESWR NSMVDPINIRDCSSSRVAIFRDREKDRYDPDYDRSYDRYVRGALGNQSFNMLPVNVQKMQVPFIQYYPGFPQSVQMPRNQSSYGYMPAATPVFNPYCAVG MNQTSQDAAYAQWPSPSMMYAHSYDQFRHAVFQAPFCQQPLTFDYGQNH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	0	1
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	1.0	0.9707
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	2.4	0.9309
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	2.8	0.9380
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	4.0	0.9443
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	4.7	0.9254
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	5.0	0.9374
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	6.7	0.9437
AT2G39950			unknown protein		Lus10040223 [exp]	10.4	0.9268
					Lus10010883 [exp]	11.8	0.9099
					Lus10006006 [exp]	13.0	0.9241

Compare expression of checked genes

Lus10038997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.