Plant FIBer expression Database

Lus10038999 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15180 119 / 2e-31 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027294
[exp]
196 / 1e-60 AT3G15180 576 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G396500
[exp]
132 / 2e-36 AT3G15180 623 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF10508 Proteasom_PSMB Proteasome non-ATPase 26S subunit
Representative CDS sequence
>Lus10038999 pacid=23150506 polypeptide=Lus10038999 locus=Lus10038999.g ID=Lus10038999.BGIv1.0 annot-version=v1.0
ATGGACGTTCCTGCTCAGCTACTTGAATGCGCCTCCGATTTTGCACTATATCCTGGTCCTCACAGCGACGATGCTGCCCAACAGTTTCTTGATCGGTTTC
CTCTTCCAGTCATTCTAAGTGTTTTGCAGAACGGTAAAAATGCGCCTGGGCTGGAGGATGCTTTGGTTCCTTGTCTGGAGAGGCTCCTCTCTACTAAATA
TGGAGCTTCTCTCATCCCGCAGTACCTGCCTTTTCTGCAGATGGCTTTGGGTGCAGATAGTCAGAATGTCAGATGCCTAGCTTGCAAAACGGACATGCTT
TCAATTGCTGCCAATTTTGGTCCAGAAAGTGTACTGCTTTCTTTCATTCAGGGTGCTGGAACCGGGTGGTTGTGTATTAAGATAAAGGCAATCCAGGAAG
CTTTCATCAGTTCGACCAGAATGAGCAACAACCCCGCTCTTTCTGGATTAGCTGCCAAGTTGGAGGAAGCAGTGAGTAGGGGACCTTACCTCACACGCAA
GAATCGTGAAGCTCAACCCGCTGTAATGACGGCTGACCGATTCTAA
AA sequence
>Lus10038999 pacid=23150506 polypeptide=Lus10038999 locus=Lus10038999.g ID=Lus10038999.BGIv1.0 annot-version=v1.0
MDVPAQLLECASDFALYPGPHSDDAAQQFLDRFPLPVILSVLQNGKNAPGLEDALVPCLERLLSTKYGASLIPQYLPFLQMALGADSQNVRCLACKTDML
SIAANFGPESVLLSFIQGAGTGWLCIKIKAIQEAFISSTRMSNNPALSGLAAKLEEAVSRGPYLTRKNREAQPAVMTADRF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15180 ARM repeat superfamily protein... Lus10038999
[exp]
0 1
AT5G26040 HDA2 histone deacetylase 2 (.1.2) Lus10024990
[exp]
5.7 0.8445
AT2G17695 unknown protein Lus10028386
[exp]
5.8 0.8574
AT5G55760 SRT1 sirtuin 1 (.1) Lus10016619
[exp]
11.8 0.8264
AT1G63110 GPI transamidase subunit PIG-U... Lus10029590
[exp]
12.0 0.7893
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10027532
[exp]
13.4 0.8391
AT3G26880 Plant self-incompatibility pro... Lus10025937
[exp]
14.0 0.8221
AT1G54870 NAD(P)-binding Rossmann-fold s... Lus10033745
[exp]
14.7 0.8200
AT4G14385 unknown protein Lus10011821
[exp]
16.0 0.8110
AT1G33970 P-loop containing nucleoside t... Lus10009482
[exp]
16.6 0.8203
AT3G07525 ATG10, ATATG10 autophagy 10, autophagocytosis... Lus10002145
[exp]
17.1 0.7906

Lus10038999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.