Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05140 358 / 3e-120 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 259 / 6e-80 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT5G09850 74 / 2e-14 Transcription elongation factor (TFIIS) family protein (.1) AT2G38560 49 / 4e-06 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027295 [exp] 827 / 0 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1) Lus10003853 [exp] 80 / 3e-16 AT5G09850 268 / 4e-88 Transcription elongation factor (TFIIS) family protein (.1) Lus10002088 [exp] 80 / 3e-16 AT5G09850 276 / 9e-91 Transcription elongation factor (TFIIS) family protein (.1) Lus10034247 [exp] 50 / 1e-06 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 45 / 0.0001 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 42 / 0.0002 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10042137 [exp] 44 / 0.0004 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10022735 [exp] 42 / 0.001 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033300 [exp] 522 / 0 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 510 / 3e-179 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.019G003900 [exp] 83 / 3e-17 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1) Potri.001G307600 [exp] 66 / 1e-11 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.014G144000 [exp] 56 / 9e-09 ND / Potri.012G077700 [exp] 44 / 0.0002 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.001G031200 [exp] 41 / 0.0006 ND / Potri.006G109300 [exp] 42 / 0.0008 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10039000 pacid=23150700 polypeptide=Lus10039000 locus=Lus10039000.g ID=Lus10039000.BGIv1.0 annot-version=v1.0 ATGAAACCAGGGATGATGGATTACTGGAGGGACTATTTCCGATCAGCGAATTCAGATATATTCGGGATAATCGACCACGCAATCATGGTGGCAGCGTCGG ATTGTCCGAAGGAGTTTCGGATGCGAAGGGATCAGATTGCAGAGCGGCTGTTTTCTTCCAGGCTGAGTCAGTGTTCCGGCTGTCACCGTGTGGAGTTGGC AGTGCCGCCCTCGGAGGAGGAGGGTGCGATCAGCGGCGACCAGGAGGGGGAGGAGGAAGGAGGTGACGAGGAGATTGACGTCTGCGGCGACTTTGAGGAA GGAGGTGGGAGCAAAGGGAGTAAAGTCAATAGTAGTAGCAGGCGGAATGAGACTGATGATGGGGAGGCAAATTTGAACAACGATCAGTTGGGGAGTAATT ACAGCTACGATGAAGCTGAAGCTTTGACTGATGAGATTGAAGAACAGTCTCAGGTTTTTGATGAAGTCTTGAGGATCAAATCCGTTATCCTCAATCATCG TGATGAGACGGATTCGACGCTGTTTGATTCACTAAGGAGGCTTCAATTGATGGCTTTGTCTGTGGATACTATTAAGGCAACTGAGATCGGGAAGGTTGTC AATAACCTCAGGAAGCATGGATCGGCCGAAATTCGTCACTTGGCACGAACACTTATCGAGTTATGGAAAGACTTGGTGGATGAGTGGTTCAATGCTTCGA AGACCATCGTAAGTAGGAATGAAAGTACTCCCGATTCGGGAAATCCATCTGTTCTCGATGAAGAATATGGACTTCCTTCTCCTCCAATGGACGAAGCCTT CTTTGCTACTCAAGCTACTGGAATTGAGCTTTCACAATTTTTCGATGGAATGGATGACGATGGAAATCCTCGCAATGCTGTGGAAATGAATAGAAATCGT GGGAATGGAAGGAAACCATCAAATGAGGCTAGGAGTATACCGAAGCTGAAACAACAGCCTATGCATAATGAGGTGAATGCCCTAACAAGGAACAGTCAGC AGATGAGGCCGAGTAAGCCACTGAACAACAATGCCGGACCAAGGAGACCTCTAAATCAGAACCTTGAGCAGAAGGTGAATAATTCGTCGATGTTGCAGAG AAGAACTGATCATCAGATTGCTGGCCAGAGGAATCCCTCAAGTGGTGGCCTACAACAACAAAACAAATTGAAGTGTTCAGATGAAGTTGCCGTCCAGATG AAACTGGAAGCCACTAAGAGGAAACTTCAGGAAAGCTATCAACAAGCTAACAACGCAAAGAGACAGCGGACGATACAGGTGATGGAGTTGCACGATCTCC CGAAGCAAGGAGGGACTTCCAACCGAAATCCGAACATGACGAAACATGGGAACGGTAACCGGCATTGGGCTAATGGACGGCGTTGA
AA sequence Show only first row Show all	>Lus10039000 pacid=23150700 polypeptide=Lus10039000 locus=Lus10039000.g ID=Lus10039000.BGIv1.0 annot-version=v1.0 MKPGMMDYWRDYFRSANSDIFGIIDHAIMVAASDCPKEFRMRRDQIAERLFSSRLSQCSGCHRVELAVPPSEEEGAISGDQEGEEEGGDEEIDVCGDFEE GGGSKGSKVNSSSRRNETDDGEANLNNDQLGSNYSYDEAEALTDEIEEQSQVFDEVLRIKSVILNHRDETDSTLFDSLRRLQLMALSVDTIKATEIGKVV NNLRKHGSAEIRHLARTLIELWKDLVDEWFNASKTIVSRNESTPDSGNPSVLDEEYGLPSPPMDEAFFATQATGIELSQFFDGMDDDGNPRNAVEMNRNR GNGRKPSNEARSIPKLKQQPMHNEVNALTRNSQQMRPSKPLNNNAGPRRPLNQNLEQKVNNSSMLQRRTDHQIAGQRNPSSGGLQQQNKLKCSDEVAVQM KLEATKRKLQESYQQANNAKRQRTIQVMELHDLPKQGGTSNRNPNMTKHGNGNRHWANGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	0	1
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	1.0	0.9387
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	2.4	0.9252
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	3.2	0.9311
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	4.0	0.9335
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	4.0	0.9384
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	6.5	0.9380
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10020070 [exp]	7.7	0.9176
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	8.4	0.9080
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10031322 [exp]	9.8	0.9102
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	10.1	0.8920

Compare expression of checked genes

Lus10039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.