Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 946 / 0 DNA/RNA helicase protein (.1) AT5G22750 364 / 4e-111 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 361 / 4e-108 Helicase protein with RING/U-box domain (.1) AT3G16600 207 / 4e-57 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 206 / 8e-55 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G05120 202 / 2e-54 Helicase protein with RING/U-box domain (.1) AT1G61140 190 / 1e-49 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 180 / 1e-46 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 148 / 3e-36 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G02670 136 / 5e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027296 [exp] 660 / 0 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10043365 [exp] 354 / 7e-107 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 304 / 1e-88 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041008 [exp] 272 / 8e-78 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 269 / 3e-75 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 201 / 4e-53 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10011211 [exp] 196 / 1e-51 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 128 / 5e-30 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10019523 [exp] 106 / 3e-25 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G035700 [exp] 1016 / 0 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 682 / 0 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 661 / 0 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 656 / 0 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 655 / 0 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.004G189400 [exp] 356 / 5e-108 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 327 / 5e-98 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 204 / 1e-54 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.011G046400 [exp] 202 / 2e-53 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.004G037700 [exp] 193 / 2e-50 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08797 [flax] [poplar] HIRAN HIRAN domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039001 pacid=23150589 polypeptide=Lus10039001 locus=Lus10039001.g ID=Lus10039001.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGCGATTCGCAGGATCCTCAGGATTCACAGTCTCTACACGACTCATCGGAGCCCTTCTTGGTCGGCTTCGTAATCGCCAACATAGTCGGTC TCCGCTACTACGACGGCAAAATCACCGGCCGCGAGCTGGTCGGTCTAATCCGCGAGCCTACAAACCCTTACGACCGGAACGCCATCAGGGTTTTCAACAC CAGGTCGCTCCAGGTCGGTCATATTGAAAAAACGGTGGCCGCCGTTCTGGCTCCGTTGATAGACTCCGGCACAATCATTGTCGAAGGTATCGTAGCTAGT CAGAGTAAGTTCAACAAGTTCAAGATTCCTGTTCAGATTCATATCTTTACCAGCATTGAGAATTTCGATGCTGTTAAGAGAATAATCGGGGAGGGTGGGT TGAGTTTGTTTGCTGATGGGAATAGTCATCGCTCTGACGCCATGATTTTTAAGGAAAATGCTGAGAGATCTGGGGTTAAGGAACTGGATAAGATATTTAA GCTAGTGGATCAGAATGTTAGTGAGAAGGAGAAGATGGGCTTGCTCGAGCCGCCTGAATCTGTGATAAAAACACAGCTTTTGGATCACCAGAAGGAAGGG TTGTGGTGGTTAGTGAACATGGAGAAATCTGTTGAATTGCCTCCGTTCTGGGAAGAGCAAAATCGAGAGTTCGTAAATACTCTGACGAACTTTCATACTA AAACAAAGCCGGAGCCTTTGCGAGGAGGGATTTTCGCAGACGACATGGGGTTAGGGAAGACTCTAACTTTGCTGTCTCTGGTAGCCTTGGATAAATCTGC ATCTTTTGAGGTTGGTACTTCGGAATGCCAAACAAGAGAGGAGGATATCAATAATGCAGATTCTGTTTCTAGTGGTGCTAAGCGAAAGAGAGGTAGGCCA CCTAAGAAGAGTACTAGTGTTCAAGCTTCTAAGACCGCATCGAAGAAAAATAAGTCTTCTGGTGCATTGGGTACAAAGACGACACTGATTGTGTGTCCTC TTGCGGTACTTTCGAATTGGGTCACGCAACTTGAAGATCACACTCATCAGGGAGCACTTACAGTTTATATCTATCATGGAGAAAGATCAAGGGATACCAA CGAACTTAAGAAGCATGACATAGTCTTGACCACTTACAGTACCCTGGCCAGTGAAGATTCTATGGCGGACTCCCCTATGAAGCAGATTGAATGGTGGAGG GTTATTCTGGATGAAGCACATCTAATCAAGAATGTCAAAGCTCAGCAAAGCCGAGCAGTCATCCATTTGATGGCTTTGCATAGATGGGCTGTCACGGGTA CTCCTGTCCAGAATGGACCTTCTGATATGTTTCCATTGATGGCTTTCTTACGGTTCGATCCCTTCTCCACCAAAAGCTATTGGCAAAGGCTAATACAGCG CCCGATACTTGCTGGAGATAGGAGTGGCCTTTCACGACTGCAGGTTTTAATGGCTACAGTTTCCTTGAGAAGGACGAAAGAGAAGACTTTAGTTGGCTTA CCATCTAAAGTGGTGGAGACGTGTTATATTGAACTGTCCGATGAAGACCGCCAACTGTACGATGATGTTGAACAAAAAGCTAAACTTGTTGTTCAGGGCT TCATTAACGCAGGGAGTTTAACACACAATTATTCAGCTGTGCTTTGTTTGATTCTCCGGCTTCGACAGATTTGCAATGATTCAGCTTTGTGCCCCCCTGA TCTCAAATCACTTCTTCCTTCTTACACTATGGAAGATGTATCTACTAACCCAGAGCTGTTGAAAAAGATTGTTGTGTTGCTGCAAGATGGCGAAGATTTC GAGTGTCCTATTTGCATCACCCCGCCAACTGACACTATAATCACCTGCTGTGCTCACATCTTCTGCCGACTCTGCATCATGAAAGTAATGAAACAAGACA AATCCCGTTGCCCACTTTGTCGTCGCGAGCTCTCTCAATCCGACTTGTTCTCAGCTCCACCAAAGACTCTCGGCACCGAAGAAGACGATCAAACTTCCTC ATCATCACAATCTCTTCTACCATCATCATCCAAAGTGTCAGCACTTCTGAAACTCCTCACCGCCTCCAAGAACGAAGACCCAACAACAAAATCGGTAGTC TTTTCACAGTTCCAGAAAATGCTCCTACTCCTCGAGGGCCCCTTGAGAGCAGCCGGGTTCAAGACCTTGCGATTAGACGGATCGATGAGTGCGAAAAAAA GGTCCCAAGTGATGAAGGAATTCGGAACAATGGGAGTAGAAGAGGATGAGCCAACAATCCTTTTGGCGAGCCTGAAGGCATCTGGAGCCGGTATAAATCT AACGGCTGCATCAAGGGTGTACTTGTTTGAGCCGTGGTGGAACCCTGCTGTTGAAGAACAGGCAATGGACAGAGTCCACCGGATCGGGCAGAAGAAGGAT GTGAGAGTTACGAGGTTGATAACGCGGAATAGTATCGAGGAGAGGGTGTTGGAGATGCAAGAAAGGAAGCAGAAGATGGCGGAGGAAGCCCTTGGAGGGC GCAGGACAAAGTCTCAAAGGGAAGTGAGTACGGATGATATCCAGAGACTCATGTCATTGTGA
AA sequence Show only first row Show all	>Lus10039001 pacid=23150589 polypeptide=Lus10039001 locus=Lus10039001.g ID=Lus10039001.BGIv1.0 annot-version=v1.0 MEGGDSQDPQDSQSLHDSSEPFLVGFVIANIVGLRYYDGKITGRELVGLIREPTNPYDRNAIRVFNTRSLQVGHIEKTVAAVLAPLIDSGTIIVEGIVAS QSKFNKFKIPVQIHIFTSIENFDAVKRIIGEGGLSLFADGNSHRSDAMIFKENAERSGVKELDKIFKLVDQNVSEKEKMGLLEPPESVIKTQLLDHQKEG LWWLVNMEKSVELPPFWEEQNREFVNTLTNFHTKTKPEPLRGGIFADDMGLGKTLTLLSLVALDKSASFEVGTSECQTREEDINNADSVSSGAKRKRGRP PKKSTSVQASKTASKKNKSSGALGTKTTLIVCPLAVLSNWVTQLEDHTHQGALTVYIYHGERSRDTNELKKHDIVLTTYSTLASEDSMADSPMKQIEWWR VILDEAHLIKNVKAQQSRAVIHLMALHRWAVTGTPVQNGPSDMFPLMAFLRFDPFSTKSYWQRLIQRPILAGDRSGLSRLQVLMATVSLRRTKEKTLVGL PSKVVETCYIELSDEDRQLYDDVEQKAKLVVQGFINAGSLTHNYSAVLCLILRLRQICNDSALCPPDLKSLLPSYTMEDVSTNPELLKKIVVLLQDGEDF ECPICITPPTDTIITCCAHIFCRLCIMKVMKQDKSRCPLCRRELSQSDLFSAPPKTLGTEEDDQTSSSSQSLLPSSSKVSALLKLLTASKNEDPTTKSVV FSQFQKMLLLLEGPLRAAGFKTLRLDGSMSAKKRSQVMKEFGTMGVEEDEPTILLASLKASGAGINLTAASRVYLFEPWWNPAVEEQAMDRVHRIGQKKD VRVTRLITRNSIEERVLEMQERKQKMAEEALGGRRTKSQREVSTDDIQRLMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05130			DNA/RNA helicase protein (.1)		Lus10039001 [exp]	0	1
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	7.8	0.7036
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	8.2	0.8215
AT5G13950			unknown protein		Lus10031980 [exp]	13.3	0.7883
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	21.4	0.7084
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	23.0	0.7893
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	27.3	0.7508
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	28.1	0.7520
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	28.5	0.7759
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	30.9	0.7619
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	32.8	0.7691

Compare expression of checked genes

Lus10039001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.