Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22270 645 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 632 / 0 Topoisomerase II-associated protein PAT1 (.1) AT1G79090 488 / 1e-160 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027297 [exp] 1435 / 0 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 1095 / 0 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 1075 / 0 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10031788 [exp] 567 / 0 AT1G79090 763 / 0.0 unknown protein Lus10031210 [exp] 514 / 2e-170 AT1G79090 766 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G020100 [exp] 865 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.006G021900 [exp] 859 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 636 / 0 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.011G143900 [exp] 635 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 590 / 0 AT1G79090 687 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039002 pacid=23150494 polypeptide=Lus10039002 locus=Lus10039002.g ID=Lus10039002.BGIv1.0 annot-version=v1.0 ATGTATATGGAGCGATCTGCTTCCGGAAAAGATGTTGCCATGAGGGACTTGGCCCAGACTTCCTCCACCGGTACACTGTTTGATGCATCACAATACGAGT TTTTTGGTCAACATGTTGCTGCACAAGGACTGGAGTTGGGTGGTCTGGAAGAAGATGCCAATCCAGTCTTCGGATCTGTTGGTGATGAATATCGCTTGTT TGATGATGGTGCAAGTGTAGGATCCTTATCCGATATGGATGATTTGGCGAGTACTTTTGCGAAGTTGAACAGAGTTGTTACTGGTCCAAAGAATCCAGGG GTGATTGGTGATAGGGGATCAGGATCCTTCTCCAGGGAAAGTTCATCTGTTGCTGAATGGGCACAAGATGCTGAATCTTCTTCCTGGCTAGATCAGCATG GGTTTGATCCAGACTATCATGAAAGCAGGAGGGCTTTATCACTTAATCTACCTCCAGATTTTCATGAAAGCAAGAGGACTTTATCACTTAACCAACCTTC TTCTGTGAGGTTTACAGAATCCAAACCTTTGTACAGAACTTCCTCTTACCCCGAGCAGCAACATGGAGAATTCAGTAACAACTGGTTAGATCAGCAGATA TATGATACAGAGAGTGTTCAGGAAAACAAGAGATGGTCGTCACAGCCATCTATTCATTTCGCTGATGCTAAACCTTTGCACAGAACTTCTTCATATCCTC TACAGCAACTCCAGCAACATTTCCCCAATGAGCCAGCGCCATCTAATTTCACTTCGTTTCCTCCTCCCGGGGGGCGAGTTGATCAACCATTACAACACTA CCATAGTGTTCCGTCTCCTTCCACTGCATTGCAGTTGCCTTATCCTTCTCCGTCTCCTTTATCCAACCCCAACATCCATTTGGCAGGTTTACATCGGGGA GCCCATTTCGGTGGAAATATGTCGCAGGTCACATCCCATGGTCTTCCTTTTAGTAACAGGCCTCAAAAGCAATGGGTTAATCATGGTGGCTTGCTGAATA TAGATCATTCTAGTCTCTTGCAGAGTGTATTGCAGCAACAGTTATCGCATCAAAATGGGCTGATGCCTCCACAGTTGTTGTCACCACAGCAGCGATTTCA CCCCTCAGCTCAACCATCTATGGCTCATTTTTCCGCATTGCAGTCCCAACTTTATGGTTCACATTCATCAGCACAGAAATTAATGCTGGGTCTAGGTGAC AGTAGGGATCAAAAGCCTAAATCATCTCATAGAGGGCGCCATAATTCGCGGTCTTCACAGCAAAGTTCTGAGACTGCTAGTCAAAGAAGCGATGGTGGTG GATCATCAATCCAATTTAGATCGAAATATATGACATCTGAAGAGATTGAGAGCATACTGAAAATGCAACATGCTGCTGCTACACATGGTAATGACCCCTA TGTTGATGACTATTATCATCAAGCTCGGCTTGCCAAAAAATCTACAGGCTCAAGGTCAAAGCATCATAATTTCTGCCCATCTCACCTGAAAGAGCAACCA CATCGATCTCGTAATAGCACAGAGCAGCAGTCATATCATGTTGATGCACTTGGGAAGGTTCCTATACCCACCATACGTAGGCCTCGGCCTCTCCTTGAAG TTGGTCCTGTTTCTACGGAGGGTAGTAGCGCTGAACAAATCTCTGAAAGGCCTCTTGAGAAGGAACCAATGCTTGCAGCGAGAGTGACTGTTGAAGATGC GGTGGCTCTCCTTATTGATGTTGATGACATTGATCGGTACCTTCTGTTTAATCAACCTCAAGATGGCGGTGCGCAGCATAGAAGGAAGCGGCAGATACTG CTCGAGACTTTAGCTACAGCACTCCAGCTCGTTGATCCTCTTGGCCAGAGTGGAAATACTACCGGGCCGGCTTCTAAAGATGATATTGTGTTCTTGCGCT TGGTTTCTCTGCCAAAGGGTAGAAAACTTATCACAAAGTTTCTTCAGCTTCTAGTACCGGGTAGCAACCTTATCCGGATTCTCTGCATGGCCATTTTCCG GCATTTAAGGTTTTTGTTCGGTGGTGTTCCCTCTGATCCTTCGGCAGCCAAGACGAGTTTGAATCTGTCAAAGGCAGTGTGTGTTTCTGTCAGTGGTATG GATCTTCACGCACTTAGTGCTTGCCTTGTTGCAGTTGTTTGCTCATCAGAACAGCCACCATTTCGACCTCTTGGTAGTACGGCTGGTGATGGGGCTTCTA TTTTATTGAAGTCAGTTCTTGAGAGAGCTACTGAACTACTAAGCGATCCTCAAGCTACTGCCTTTGGTCCTGTTCCCAACTTTGCTCTCTGGCAAGCATC CTTTGATGAATTTTTTGACCTGCTGACTAAGTACTGCCTGGCGAAATATGAAACTATCCTCCAGTCGGTCTATGCAAAAACGCCAGCTGATACAGATGAT ATTGATGAAGATGTTCAGGCAGCTACTAAGCGCGAGATGCCTGTGGAGCTGTTGCGTGCTTGCCTTCCACACACTAATGAAAAACAAATGGACCTCTTGA GACATTTTGGACAGCAACGAGGTTCTATGACTGGATTGACTACACATTCGGGTTCCGGTGGCATCATAAGCTCTGAATCAGTGAGAAGTTAA
AA sequence Show only first row Show all	>Lus10039002 pacid=23150494 polypeptide=Lus10039002 locus=Lus10039002.g ID=Lus10039002.BGIv1.0 annot-version=v1.0 MYMERSASGKDVAMRDLAQTSSTGTLFDASQYEFFGQHVAAQGLELGGLEEDANPVFGSVGDEYRLFDDGASVGSLSDMDDLASTFAKLNRVVTGPKNPG VIGDRGSGSFSRESSSVAEWAQDAESSSWLDQHGFDPDYHESRRALSLNLPPDFHESKRTLSLNQPSSVRFTESKPLYRTSSYPEQQHGEFSNNWLDQQI YDTESVQENKRWSSQPSIHFADAKPLHRTSSYPLQQLQQHFPNEPAPSNFTSFPPPGGRVDQPLQHYHSVPSPSTALQLPYPSPSPLSNPNIHLAGLHRG AHFGGNMSQVTSHGLPFSNRPQKQWVNHGGLLNIDHSSLLQSVLQQQLSHQNGLMPPQLLSPQQRFHPSAQPSMAHFSALQSQLYGSHSSAQKLMLGLGD SRDQKPKSSHRGRHNSRSSQQSSETASQRSDGGGSSIQFRSKYMTSEEIESILKMQHAAATHGNDPYVDDYYHQARLAKKSTGSRSKHHNFCPSHLKEQP HRSRNSTEQQSYHVDALGKVPIPTIRRPRPLLEVGPVSTEGSSAEQISERPLEKEPMLAARVTVEDAVALLIDVDDIDRYLLFNQPQDGGAQHRRKRQIL LETLATALQLVDPLGQSGNTTGPASKDDIVFLRLVSLPKGRKLITKFLQLLVPGSNLIRILCMAIFRHLRFLFGGVPSDPSAAKTSLNLSKAVCVSVSGM DLHALSACLVAVVCSSEQPPFRPLGSTAGDGASILLKSVLERATELLSDPQATAFGPVPNFALWQASFDEFFDLLTKYCLAKYETILQSVYAKTPADTDD IDEDVQAATKREMPVELLRACLPHTNEKQMDLLRHFGQQRGSMTGLTTHSGSGGIISSESVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22270			Topoisomerase II-associated pr...		Lus10039002 [exp]	0	1
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10026137 [exp]	1.0	0.9056
AT1G73460			Protein kinase superfamily pro...		Lus10031329 [exp]	11.7	0.8934
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	13.0	0.9037
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	15.1	0.8973
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10036025 [exp]	22.0	0.8340
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	22.1	0.8728
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	25.9	0.8650
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	26.3	0.8832
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	26.6	0.8878
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	30.9	0.8817

Compare expression of checked genes

Lus10039002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.