Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 90 / 2e-21 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 89 / 4e-21 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 81 / 5e-18 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 68 / 9e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G42770 62 / 2e-11 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G24570 60 / 1e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 59 / 4e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT1G52870 59 / 5e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G04470 54 / 1e-08 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027297 [exp] 308 / 7e-98 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012098 [exp] 273 / 3e-92 AT5G19750 259 / 4e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10010446 [exp] 268 / 1e-90 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 95 / 6e-23 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 91 / 9e-22 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 76 / 2e-16 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 76 / 3e-16 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10018700 [exp] 74 / 3e-15 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10038626 [exp] 67 / 2e-13 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029700 [exp] 280 / 9e-95 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 278 / 5e-94 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 93 / 2e-22 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 90 / 3e-21 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G037100 [exp] 70 / 2e-14 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G007100 [exp] 67 / 2e-13 AT4G04470 230 / 1e-77 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G081600 [exp] 67 / 3e-13 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 61 / 1e-10 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.004G008700 [exp] 59 / 1e-10 AT4G04470 209 / 2e-69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.011G123700 [exp] 60 / 3e-10 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10039003 pacid=23150418 polypeptide=Lus10039003 locus=Lus10039003.g ID=Lus10039003.BGIv1.0 annot-version=v1.0 ATGATGATGTCGATGATGACTACGGTGCTGCAAAGCCCAGATTTGGATTCTTCTGAATATGGATTTAGGCAGCTGGGTAGCCATCATTTACGGGTATTGG CTGTTTCCGGTGGAGGAGGGTCTGGTGGTGGTGCCGGCGGGATAGGAGGCTCCGGCGGAGATGGAAATTCCGGTGGTGGAAGCCTGGATGGTGGGAATCA TCACTGGTCTTTACTTTCATGCCTTCTAGCCAAGTATCCTGTTCTTACAAAGGCTGTAACTTCCGGACTTCTCAATTTTCTTGGAGACATAATCTGCCAG GTTGTGATTGATAAAGCTCCATCACCAGACTTCAAGAGGACTTCCCGGTTTGCCTTCTTGGGACTCGTACTTGTTGGTCCTGCTTTGCATTTCTGGTATG TGTATCTGAGCAAACTGGTGACGATTCCTGGAGCAGCAGGTGCATTCACCCGTCTTATACTCGACCAGTTCCTTTTTGCTCCAGTTTTTCTCGGGGCCTT CTTATCTACATTGCTTGTGCTTGAAGGAAGGCCATCCCAAGTTGTACCAAAGCTCCAACAGGAACTGGTTTCTTCTGTTGTAGCAAATTGGCAACTGTGG ATCCCGTTTCAGTTTCTGAACTTCAGATTCATGCCACAACAGTTTCAGGTTCTGGGTGCAAATGTGATTGCTTTGGTTTGGAATGTGATATTTTCATTCA AAGCCCGCAAAGAGATTCTGCTGAAATAG
AA sequence Show only first row Show all	>Lus10039003 pacid=23150418 polypeptide=Lus10039003 locus=Lus10039003.g ID=Lus10039003.BGIv1.0 annot-version=v1.0 MMMSMMTTVLQSPDLDSSEYGFRQLGSHHLRVLAVSGGGGSGGGAGGIGGSGGDGNSGGGSLDGGNHHWSLLSCLLAKYPVLTKAVTSGLLNFLGDIICQ VVIDKAPSPDFKRTSRFAFLGLVLVGPALHFWYVYLSKLVTIPGAAGAFTRLILDQFLFAPVFLGAFLSTLLVLEGRPSQVVPKLQQELVSSVVANWQLW IPFQFLNFRFMPQQFQVLGANVIALVWNVIFSFKARKEILLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10039003 [exp]	0	1
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	3.0	0.7309
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	4.7	0.7288
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	6.5	0.7269
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	8.9	0.7217
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	9.9	0.7101
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	14.3	0.7227
					Lus10010602 [exp]	15.2	0.6177
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	18.2	0.7190
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	19.2	0.7036
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	22.3	0.6324

Compare expression of checked genes

Lus10039003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.