Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G14310 188 / 9e-59 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G44730 43 / 0.0001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027299 [exp] 501 / 0 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010452 [exp] 412 / 2e-146 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10037187 [exp] 178 / 1e-54 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10036740 [exp] 177 / 1e-54 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10015451 [exp] 47 / 8e-06 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037600 [exp] 411 / 3e-146 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G040800 [exp] 396 / 2e-140 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G093900 [exp] 181 / 1e-55 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10039005 pacid=23150676 polypeptide=Lus10039005 locus=Lus10039005.g ID=Lus10039005.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCACGTACCAAATTGTCGAAAGCCTTCCTCTCCACTCTCCTCAACAATACCAACCCTCGATCGGGACTACTTAGCGGCAGCTCTAATGGGT TTTCCGCCGCTCCCTACTCCTCGTCGTCCGCCGCTGCGGCGATAGCGCCGGAGCAGCAGTTCGAGCTCCTGGGAGGTAAAGACTATCAGGAATACAGGAG GTCTCTGTATGGAGACATCACTCACAAGGCTCTCCTCGTTGATGCTGTTGGCACCCTTGTCGTTCCTTCCCAGCCAATGGCTCAGATATACAAACAGATT GGGGAGAAATATGGAGTTCAGTGGACGGAGGATGAGATATTGAAGAGGTACAGAAGGGCTTATGAGCAGCCTTGGGGTAGATCGCGTCTCAGATATGTCA ATGATGGCAGACCATTCTGGCAACATATAGTCACTTCTTCAACAGGCTGCTCGGATGACCAGTACTTCGAGGAACTTTATAACTACTACACAACTGACAA GGCTTGGCACATAAATGACCCTGAAGCTGGGAAAGTATTTGATGCCATTAGAAAGGCTGGTGTCAAGGTGGCTATTGTGTCAAATTTCGATACTCGGCTG AGACCCCTCTTGCGTGCTTTAAACTGCGACAACTGGTTTGATGCTGTGGCAGTTTCAGCTGAAGTCTCTGCAGAGAAGCCTAATCCGACGATATTTCTTA GAGCATGTGAGCTATTGGGAGTAAATCCGGAGGATGCTGTTCATGTGGGGGATGATCGTAGGAACGACATATGGGGGGCAAGAGATGCAGGCTGTGATGC TTGGCTTTGGGGAAGCGATGTGCATTCCTTCAAGGAGGTTGCTCGGAGGATAGGGGTGCGAGTCTGA
AA sequence Show only first row Show all	>Lus10039005 pacid=23150676 polypeptide=Lus10039005 locus=Lus10039005.g ID=Lus10039005.BGIv1.0 annot-version=v1.0 MAAARTKLSKAFLSTLLNNTNPRSGLLSGSSNGFSAAPYSSSSAAAAIAPEQQFELLGGKDYQEYRRSLYGDITHKALLVDAVGTLVVPSQPMAQIYKQI GEKYGVQWTEDEILKRYRRAYEQPWGRSRLRYVNDGRPFWQHIVTSSTGCSDDQYFEELYNYYTTDKAWHINDPEAGKVFDAIRKAGVKVAIVSNFDTRL RPLLRALNCDNWFDAVAVSAEVSAEKPNPTIFLRACELLGVNPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVARRIGVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10039005 [exp]	0	1
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10027299 [exp]	1.0	0.8620
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034262 [exp]	4.2	0.7469
AT3G27250			unknown protein		Lus10014610 [exp]	4.5	0.8017
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	7.5	0.8088
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10010803 [exp]	7.7	0.7442
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	8.8	0.8197
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	11.0	0.7702
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	13.9	0.8023
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	16.9	0.7380
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	17.3	0.7748

Compare expression of checked genes

Lus10039005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.