Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56970 127 / 7e-35 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56980 102 / 2e-25 bHLH ORG3, bHLH039 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 97 / 1e-23 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2) AT5G04150 91 / 2e-21 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 52 / 6e-08 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 47 / 6e-06 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G71200 45 / 3e-05 bHLH bHLH160 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 42 / 0.0002 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 42 / 0.0003 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G25400 41 / 0.0003 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027300 [exp] 321 / 6e-110 AT3G56970 139 / 2e-39 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010453 [exp] 132 / 1e-36 AT3G56970 126 / 8e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003823 [exp] 118 / 3e-31 AT3G56970 129 / 1e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024812 [exp] 44 / 8e-05 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 44 / 8e-05 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10007101 [exp] 44 / 9e-05 AT2G31220 268 / 8e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10017152 [exp] 43 / 0.0002 AT5G56960 196 / 4e-56 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10011172 [exp] 42 / 0.0002 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 41 / 0.0006 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037300 [exp] 123 / 3e-33 AT3G56970 162 / 5e-49 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037600 [exp] 120 / 2e-32 AT3G56970 184 / 9e-58 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037200 [exp] 115 / 2e-30 AT3G56970 168 / 2e-51 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 44 / 5e-05 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 42 / 0.0002 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 41 / 0.0008 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G305100 [exp] 40 / 0.0009 AT1G49770 180 / 1e-54 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039006 pacid=23150718 polypeptide=Lus10039006 locus=Lus10039006.g ID=Lus10039006.BGIv1.0 annot-version=v1.0 ATGTTGGCAATGTCATCAACATCATCTTCAACCAATTTGGGAAGAGGATCATCATCATGGCCCTCCAATTCTTTGTTATTAGAGGATCCATTAATCACAT TACTACCCAATTACCAACTTCATCATCTAATTCAACCCACGACTACTACTCTTTTCCCTCCTCCACCCTCTTCTTCTTCTTCATCTCCTCCTCCATTTCT AGATGTTTCGGCCACCGCAGAGCCAGAGCATCAGCTCAAGGGCAGTAGTACTAGTAGTGGTGGCACGACGACCACGGTGAAGAAGTTGAACCATAATGCA AGTGAACGCCATCGTCGGAAAAAGATCAACACCCTCTATTCCTCCCTCCGGTCCTTGCTTCCCCAGTCCGATCATCATCCCACGAAGAAAGTGAGCATAC CGATAACAGTGTCGAAGGTACTGAAGTACATACCGACACTCCAACAAGAAGTGGAAACATTAGTTCAAAAGAAGAAGGATTTATTGTCAACCATTCCCAA CCATAATCAAGATTTTGATCATTGTTATAATGGTGATGATGATCAAGGAAGAAGTAGCAATCAAAAGAGTAGTTTCTCCCCATCATCTTCATCATTGATG TCATCCTCATCAACAGTGTCCACTAGTTGGATAAGTGAAGAAGAAGTCATGGTCCAAGTTTCCATTGCTTGTGATGATAACAACAACAACATATTTCCTA CATCAGAGATCTTGTTGCATCTCCAACACTCCGGATTCGCTCTACTCAACTCTTCCTCTTTCGAGTGCTTCCACGCCAGGGTCTTCTACAACTTCCATCT ACAGGTAGAAAGAAGCCATGGAGTAGAAGTAGTGGATAGTGAAGCTCTAAGTGAGAAGCTGCTGAGATTATATGAAAGCAAGCTTGGAGTTATCGTTCAT AACTAG
AA sequence Show only first row Show all	>Lus10039006 pacid=23150718 polypeptide=Lus10039006 locus=Lus10039006.g ID=Lus10039006.BGIv1.0 annot-version=v1.0 MLAMSSTSSSTNLGRGSSSWPSNSLLLEDPLITLLPNYQLHHLIQPTTTTLFPPPPSSSSSSPPPFLDVSATAEPEHQLKGSSTSSGGTTTTVKKLNHNA SERHRRKKINTLYSSLRSLLPQSDHHPTKKVSIPITVSKVLKYIPTLQQEVETLVQKKKDLLSTIPNHNQDFDHCYNGDDDQGRSSNQKSSFSPSSSSLM SSSSTVSTSWISEEEVMVQVSIACDDNNNNIFPTSEILLHLQHSGFALLNSSSFECFHARVFYNFHLQVERSHGVEVVDSEALSEKLLRLYESKLGVIVH N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	0	1
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	1.0	0.9289
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10016389 [exp]	3.9	0.8686
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	6.6	0.8655
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	9.9	0.8931
AT2G34930			disease resistance family prot...		Lus10039531 [exp]	12.2	0.7751
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	14.7	0.8236
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	17.0	0.8594
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10010575 [exp]	17.5	0.8648
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	20.1	0.8595
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10039723 [exp]	22.8	0.8315

Compare expression of checked genes

Lus10039006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.