Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36970 190 / 4e-56 Remorin family protein (.1) AT1G45207 181 / 6e-52 Remorin family protein (.2) AT2G02170 66 / 2e-11 Remorin family protein (.1.2) AT1G53860 59 / 1e-09 Remorin family protein (.1) AT1G67590 56 / 1e-08 Remorin family protein (.1.2) AT1G30320 56 / 3e-08 Remorin family protein (.1) AT3G57540 51 / 4e-07 Remorin family protein (.1) AT2G41870 50 / 8e-07 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027302 [exp] 558 / 0 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10042649 [exp] 274 / 5e-86 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10005708 [exp] 264 / 9e-83 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10009750 [exp] 245 / 1e-75 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10010227 [exp] 220 / 5e-66 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10003936 [exp] 61 / 7e-10 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037454 [exp] 60 / 2e-09 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10026302 [exp] 52 / 2e-07 AT3G57540 209 / 1e-67 Remorin family protein (.1) Lus10038522 [exp] 47 / 7e-06 AT1G30320 296 / 2e-98 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138500 [exp] 327 / 8e-110 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.014G027900 [exp] 269 / 7e-85 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 260 / 3e-81 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.007G044350 [exp] 84 / 6e-19 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.001G163000 [exp] 69 / 1e-12 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.008G144300 [exp] 64 / 8e-11 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.008G178300 [exp] 59 / 2e-09 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G098000 [exp] 59 / 3e-09 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.010G056800 [exp] 57 / 8e-09 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.006G053200 [exp] 52 / 2e-07 AT3G57540 196 / 2e-61 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10039007 pacid=23150314 polypeptide=Lus10039007 locus=Lus10039007.g ID=Lus10039007.BGIv1.0 annot-version=v1.0 ATGAAAAAGCAGCAGCAACATCTCTCTTCTTCGTCCTCACACAGTATGGGCTCATTCACCAGCGCCGGAAGCTACTACCCAGATAGCAGCAACAAAGGAT GGTGCTCAGAGCGAGTTCCCCATCCCTCCTCCTCCTCCGCAAGCAGCCGCCGGCGGATTAGTGGGCTCACACCTTTTTACAGCGGCAGAGCTGTTCCGTC TAAATGGGAAGACGCCGAGCGGTGGATTTCCAGCCCAGTTTCGGCCTACAGCGTAGCTCTTCAGGCGAAGCGACCCAAGTCCAAGAGTGGGCCGATTGGG GCTGCTCCTGGAGTAGTTCATTATTCCAACTGTTCCCCTGCACTCCAGGTGCTCGACAGTGTGTCTGTGAGGAATTTGGTTGTCAACTCCCCCTTTTCCA CCGGGGTGTTGATGCCTAATGGTGTTGGGTTCCATTATAGGGGGAGTGGCGGGGCAGTTCATGTTTCCAGCTCAGATTTGGTTAGTGATTCTTCTCTGCC TAGCTCCCCAGGAGATGAGAAAGTTGAAGAAGATATGATGGAGGGCGAAAACGGAGTTAGTCGTGTCATTTCAAGAAGGGATATGGCAACTCAGATGAGC CCAGATAGCAAAAGCAACCATTCGTCTCCAAGGGGTTCGCCTGAGAGTAGTGAACAACCTCCTAAAATGGAGATCAGAGAAGTGCAGGTAGACAAGAAGG TGACCATGACAAGCTGTTCCATGAAGCCTTCTTCTTCTTCCGCTTCCATGAAGAGATTGCCACGCTCGGAAGAGGATTTCCCTGGAAATGCTATCGTGGC TACTAACAGTTCGTCTTGGGATATTGCAGAAGCGGTTTCAGACTTGTCGAGGATCCAAAGAGAAGAAGCTAAGATCACTGCATGGGAGAACCTGCAGAAG GCAAAAGCAGAGGCTGCAATGCGAAAGCTGGAGATGAAACTCGAGAAAAAGAGATCGTCGTCCATGGACAAGATAATGACCAAGTTAAGAACAGCGCAAA CGAAGGCCCAGAAAATGAGAAGCTCAATGTCAAGCGGCGAGGAGCATCAAATCTCCACAAGACCCCAAAAACAAATTTCAACGTATAAACATATGAAGTT CAGTTCCTTGAGAAGCTGCTTTACCTGCCATCATGTATTCTGA
AA sequence Show only first row Show all	>Lus10039007 pacid=23150314 polypeptide=Lus10039007 locus=Lus10039007.g ID=Lus10039007.BGIv1.0 annot-version=v1.0 MKKQQQHLSSSSSHSMGSFTSAGSYYPDSSNKGWCSERVPHPSSSSASSRRRISGLTPFYSGRAVPSKWEDAERWISSPVSAYSVALQAKRPKSKSGPIG AAPGVVHYSNCSPALQVLDSVSVRNLVVNSPFSTGVLMPNGVGFHYRGSGGAVHVSSSDLVSDSSLPSSPGDEKVEEDMMEGENGVSRVISRRDMATQMS PDSKSNHSSPRGSPESSEQPPKMEIREVQVDKKVTMTSCSMKPSSSSASMKRLPRSEEDFPGNAIVATNSSSWDIAEAVSDLSRIQREEAKITAWENLQK AKAEAAMRKLEMKLEKKRSSSMDKIMTKLRTAQTKAQKMRSSMSSGEEHQISTRPQKQISTYKHMKFSSLRSCFTCHHVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36970			Remorin family protein (.1)		Lus10039007 [exp]	0	1
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	4.4	0.8803
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042402 [exp]	5.4	0.8188
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10008662 [exp]	13.0	0.8309
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	20.4	0.8647
AT3G48710			DEK domain-containing chromati...		Lus10035905 [exp]	22.3	0.8309
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10019949 [exp]	22.8	0.7929
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	22.9	0.8632
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	27.5	0.8427
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	31.5	0.8179
AT3G56720			unknown protein		Lus10027280 [exp]	32.3	0.7454

Compare expression of checked genes

Lus10039007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.