Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03220 411 / 1e-146 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT5G56320 263 / 1e-88 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G37640 262 / 7e-88 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 261 / 1e-87 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 259 / 7e-87 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT1G69530 257 / 3e-86 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G05290 256 / 7e-86 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 254 / 4e-85 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G02260 254 / 4e-85 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G29030 253 / 3e-84 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027304 [exp] 509 / 0 AT3G03220 411 / 1e-146 EXPANSIN 13, expansin A13 (.1) Lus10010454 [exp] 429 / 2e-153 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10003822 [exp] 424 / 4e-149 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1) Lus10037164 [exp] 268 / 2e-90 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 268 / 2e-90 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10008603 [exp] 262 / 5e-88 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 259 / 6e-87 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10040801 [exp] 258 / 2e-86 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 258 / 4e-86 AT2G39700 456 / 9e-165 expansin A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080200 [exp] 401 / 2e-142 AT3G03220 409 / 8e-146 EXPANSIN 13, expansin A13 (.1) Potri.017G140000 [exp] 399 / 2e-141 AT3G03220 403 / 4e-143 EXPANSIN 13, expansin A13 (.1) Potri.008G088300 [exp] 269 / 9e-91 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 266 / 2e-89 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G208300 [exp] 268 / 4e-89 AT4G38210 357 / 2e-124 EXPANSIN 20, expansin A20 (.1) Potri.009G169500 [exp] 263 / 2e-88 AT4G38210 335 / 5e-117 EXPANSIN 20, expansin A20 (.1) Potri.006G108000 [exp] 261 / 7e-88 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 261 / 8e-88 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.009G031800 [exp] 260 / 2e-87 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.013G060800 [exp] 260 / 2e-87 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10039009 pacid=23150659 polypeptide=Lus10039009 locus=Lus10039009.g ID=Lus10039009.BGIv1.0 annot-version=v1.0 ATGCCTACTTTCCACATTCTCCTCCTCCTCATAATCCTCCCTACTTCACTCCCCTCCGCCTACTCCCACGGCGCCTCCTCCGTCGAATCCCCGCCGCAGC ACCTCCCATCCATTTCCCCCGACTGGAAACCTGCTCGGGCAACTTACTACGCAGCATCCGACCCGCGCGACTCCGTCGGCGGAGCTTGTGGCTACGGCGA CTTGGTGAAAGCCGGTTACGGCCAGGCCACCGTGGGACTCAGCCAGTCCCTATTCCAGCGCGGCGCGATCTGCGGCGCCTGCTTCCAGCTCCGATGCGTC GACGATCTCCAGTGGTGCATCCCTGGCACTTCGATTATTCTCACTGTCACTAACTTCTGCGCACCTAATTACGGATTCCCTCTAGAAGGCGGCGGCCATT GTAACCCTCCCAACGACCACTTCGTTCTCCCTATTGAAGCGTTTGAGAAGATTGCAATCTGGAAGGCTGGCAACATGCCTGTACAGTATAGAAGAATCAA ATGCAGAAAAGAAGGCGGGATACGGTACACTGTCTCAGGATCGAGCATCTTCATATCGGTGCTTATCACAAATGTGGCAGGTGCAGGGGACATCAGTGCA GTGAAGATAAAGGGGTCTCGAACCGGGTGGCTTCCAATGGGTAGGAATTGGGGACAGAATTGGCACATCAATGCTGACTTGAGAAACCAGCCATTGTCGT TTGAAGTAAACAGCAGTGATGGGCAGACAGTTACTGCTTACAATGTTGCCCCTAAAGATTGGAACTTTGGACAGACCTTTGAAGGTAGCAAACAATTTGA GGCTTAA
AA sequence Show only first row Show all	>Lus10039009 pacid=23150659 polypeptide=Lus10039009 locus=Lus10039009.g ID=Lus10039009.BGIv1.0 annot-version=v1.0 MPTFHILLLLIILPTSLPSAYSHGASSVESPPQHLPSISPDWKPARATYYAASDPRDSVGGACGYGDLVKAGYGQATVGLSQSLFQRGAICGACFQLRCV DDLQWCIPGTSIILTVTNFCAPNYGFPLEGGGHCNPPNDHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGSSIFISVLITNVAGAGDISA VKIKGSRTGWLPMGRNWGQNWHINADLRNQPLSFEVNSSDGQTVTAYNVAPKDWNFGQTFEGSKQFEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	0	1
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	2.4	0.9320
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	3.3	0.9328
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	9.5	0.9165
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	9.8	0.9042
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	10.4	0.9119
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	11.0	0.9077
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	13.0	0.8946
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	13.0	0.9028
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	13.1	0.9070
AT4G28230			unknown protein		Lus10018539 [exp]	13.4	0.9066

Compare expression of checked genes

Lus10039009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.