Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10200 266 / 6e-92 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1) AT3G55770 198 / 8e-65 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 194 / 4e-63 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT3G61230 172 / 3e-54 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1) AT1G01780 171 / 3e-54 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT2G45800 169 / 6e-53 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027305 [exp] 362 / 1e-129 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10010455 [exp] 311 / 2e-109 AT1G10200 277 / 3e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10018674 [exp] 267 / 8e-92 AT1G10200 323 / 4e-114 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10003822 [exp] 268 / 6e-89 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1) Lus10042140 [exp] 258 / 1e-88 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 258 / 1e-88 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10007748 [exp] 255 / 9e-87 AT1G10200 308 / 5e-108 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10043462 [exp] 242 / 8e-82 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10034123 [exp] 225 / 8e-75 AT3G55770 244 / 1e-82 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087200 [exp] 300 / 4e-105 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 298 / 2e-104 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.002G118000 [exp] 266 / 1e-91 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.014G015600 [exp] 265 / 2e-91 AT1G10200 327 / 8e-116 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 248 / 1e-84 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 245 / 2e-83 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.008G063600 [exp] 200 / 1e-65 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.010G193800 [exp] 199 / 3e-65 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.003G124300 [exp] 176 / 5e-56 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 175 / 1e-55 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10039010 pacid=23150699 polypeptide=Lus10039010 locus=Lus10039010.g ID=Lus10039010.BGIv1.0 annot-version=v1.0 ATGGCCACATTTGCAGTAACCAACCAGAAATGCAAGGCTTGTGAGAAGACTGTCTATCTCGTCGACAAATTGGTCGCCGATACTCGTGTCTACCACAAAT CTTGTTTTAGATGCCACCACTGCAATAACACGCTCAAGCTGAGCAACTTTTGTTCTTTCGAAGGAGTCCTATACTGCCGGCCTCATTTTAACCAACTCTT CAAAAGAACCGGTAGCCTTGACAAGAGCTTCGAAGGCACCCCCAAAGTTTCCAAGCCCGAAAAACCAATCGACACCGAGAATGCGAACAAGATGTCAAAT CTTTTCGCGGGCACGAAGGAAAAGTGTAAGGAGTGCACAAAGACAGTGTATCCAATCGAGAGGGTGACAGTGAACGGAACATGGTACCATAGGAAGTGCT TCAAGTGCAGTCATGGAGGATGCACAATTAGCCCATCAAACTACATTGCACATGAAGGCAAGTTGTATTGCAAGCACCACCATATCCAACTGTTCAAGGA GAAAGGCAACTACAGCCAGCTCGAAAACGACAATCACGACGACGAGTGCGGTCGCCTCCCCATTGCTCCTTCTGCAGTTATTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10039010 pacid=23150699 polypeptide=Lus10039010 locus=Lus10039010.g ID=Lus10039010.BGIv1.0 annot-version=v1.0 MATFAVTNQKCKACEKTVYLVDKLVADTRVYHKSCFRCHHCNNTLKLSNFCSFEGVLYCRPHFNQLFKRTGSLDKSFEGTPKVSKPEKPIDTENANKMSN LFAGTKEKCKECTKTVYPIERVTVNGTWYHRKCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENDNHDDECGRLPIAPSAVIAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	0	1
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	4.2	0.8178
AT5G52220			unknown protein		Lus10014990 [exp]	5.7	0.7645
AT3G27030			unknown protein		Lus10012542 [exp]	5.8	0.7890
					Lus10014474 [exp]	7.2	0.8676
					Lus10034143 [exp]	10.4	0.8775
AT2G03630			unknown protein		Lus10029645 [exp]	14.8	0.8775
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	15.2	0.8143
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	15.6	0.8056
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	17.4	0.7917
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012573 [exp]	19.3	0.8735

Compare expression of checked genes

Lus10039010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.