Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56960 1135 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 1118 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 992 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 720 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 710 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 579 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 548 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 539 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 449 / 2e-147 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 231 / 7e-68 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027306 [exp] 1510 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 1267 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 1265 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10002734 [exp] 928 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10008651 [exp] 927 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 865 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 824 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10018200 [exp] 728 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 727 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036800 [exp] 1187 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 999 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 983 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.005G172800 [exp] 736 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 734 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 630 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 540 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.019G015768 [exp] 530 / 4e-178 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 370 / 5e-116 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 346 / 3e-107 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10039011 pacid=23150563 polypeptide=Lus10039011 locus=Lus10039011.g ID=Lus10039011.BGIv1.0 annot-version=v1.0 ATGAGCAAAGAACAGAGTGGGGTGGCCAAGGCATGGGAAGCCACAATACGCAAAACCCAGGCGGCCAAGAAGCGGGCCAACAGCATCTTCGGCACCATCT CCTTAGCCCACATGCCCGACGAGGACATCAACGACGATGGCTCTATCGTCGAAGATGGCCCCACCGCGGCGAACAACGGTGGGGCAGGGGAGGCAGGGTA CTACGCCGAGAAGGTGTTGCCGAACGGGGATTACTATACGGGCCAGTGGTACGACAACTTCCCCAACGGGAGGGGGAAGTATTCGTGGACGGACGGGTGC ATGTACGTCGGAGAATGGTATAAGGGGAAGACGATGGGACGCGGGAGGTTCAGTTGGCCGTCGGGGGCGACGTACGAAGGGGAGTTCAAGAGCGGATATA TGGACGGGACGGGGACTTATACGGCGGCGAATGGGGATATATACCGTGGACAGTGGGTCATGAATCTTAAGCATGGGCATGGCATCAAACAGTTTGCTAA CGGCGATTGGTATGACGGGCACTGGAGACGAGGGTTACAAGAAGGGCAAGGCAAATACCAATGGAAAGCCACAAGCAATCACTACGTCGGCGAGTGGAAG AACGGCAGCATCTGCGGCAATGGAACCTTCATGTGGGAGAACGGCAACCGTTACGACGGCCAGTGGGAAGGCGGCGTCCCAAAGGGCAACGGCACGTACA CGTGGCCCGACGGGAGCTTCTACGTCGGGAACTGGAGTAAAGACCCGACCGAACAGAACGGCAGCTACTACCCTTCCGCGCCGGCCGTAAGCCAGCTGGA GTGGGACCCGAAGGACGTGTACAACGTCCACTTAGCGGAATGCCCGATATGCCCCTGCGAGAAAGTGTCCATTTTGCCCTCGCAGAAGAAGCTGGCCATG TGGAACTCGTCCAAGAACAGCGAGAAGGCTCGCCGGCTCTCGGTCGACGGCAGGGTCAGCGTGGGGATTGAGAGAGGGTTTGAGAGGATGAACATGTGGG GCGACGTCAGCGAGGACCAGGTTCCCTCCGGGAGGATGTCGTCGGCCGGCGATGGTTTTGGTGGTGGTGGTGGGAGGAGGAGTGATATGGAGGCAGCGGA GGTTTTGGGTTTGGATGAGATGGAGGAGCAAATGATCAATTTTGCCGCCACTCTTAATAAGGGTTTGCCGATGAGGGTCCCTAAGGTTTCGAAACGGCAG GGTGCAACTATTTGTAAAGGGCACAAGAACTATGACCTCATGCTGAATCTCCAACTTGGCATCAGACACTCAGTTGGAAGACCAGGGCCGGTAGCATCAC TTGATCTAAAGGCATCAGCATTTGACCCAAAGGAGAAAGTATGGACAAGATTTCCACCAGAAGGAAGTAAGCACACTCCTCCCCATAGTTCCACCGAGTT CAAATGGAAAGACTACTGCCCTTTAGTTTTCAGGTCGTTAAGGAAGTTGTTTAACGTTGATGCGGCCGATTACATGTTGTCTATATGTGGGAACGACGCG CTGCGCGAGCTCTCGTCTCCTGGCAAGAGCGGTAGCTTCTTTTATTTGACGAACGATGATCGTTACATGATCAAGACAATGAAGAAGGCAGAAGTCAAAG TGCTTATAAGGATGCTAGCTGCATACTATAATCATGTGAGAGCCTTTGAGAATACCTTAGTGATCAGATTCTATGGCCTTCACTGCGTCAAATTAACTGG ACCTGCACAAAAGAAGGTAAGGTTCATAATAATGGGGAATCTGTTTGTTTCGGAGTACGCAATCCACAGACGGTTCGACCTCAAGGGATCGTCGCTGGGG CGGATCACGGAAAAACCCGAGTCCGAAATCAATGCCAACACCATTCTTAAAGACCTTGACCTCAACTTCATTTTCAAGTTACAGAAAGCTTGGTTCCAAG AGTTCTGCAGGCAAGTAGATCGAGACTGCGAGTTTCTTGAACAAGAGAGGATTATGGACTACAGTCTTCTAGTTGGTCTTCACTTCAGAGACGTTTCGCC TATTCGAGAAATCATACCTACTAAGGCTGAACCTCCTCCTAAAGCTGATGTTGAAAGAGAAGAAGGTCCTCGACTTTCTAGAGCGGACATGGATCAACTT CTACTAGATCCAACCAAATGGGCACGGATCAGACTAGGAATGAACATGCCAGCAAGAGTGGAAAGAACAATGAGAAAAAACGACTACGAGCTTCAGCTGG TGGGAGAGCCGACAGGGGAGTTCTACGATGTGCTACTGACATTCGGTATCATCGACATACTTCAAGACTACGACATTAGCAAGAAGCTGGAACATGCATA TAAATCCATACAGTATGACCCTACTTCTATTTCAGCTGTTGATCCTAAGCAATACTCCAGGAGATTCAGAGACTTCATCTTCAGAATATTTTCTGAAGAT TCCTAG
AA sequence Show only first row Show all	>Lus10039011 pacid=23150563 polypeptide=Lus10039011 locus=Lus10039011.g ID=Lus10039011.BGIv1.0 annot-version=v1.0 MSKEQSGVAKAWEATIRKTQAAKKRANSIFGTISLAHMPDEDINDDGSIVEDGPTAANNGGAGEAGYYAEKVLPNGDYYTGQWYDNFPNGRGKYSWTDGC MYVGEWYKGKTMGRGRFSWPSGATYEGEFKSGYMDGTGTYTAANGDIYRGQWVMNLKHGHGIKQFANGDWYDGHWRRGLQEGQGKYQWKATSNHYVGEWK NGSICGNGTFMWENGNRYDGQWEGGVPKGNGTYTWPDGSFYVGNWSKDPTEQNGSYYPSAPAVSQLEWDPKDVYNVHLAECPICPCEKVSILPSQKKLAM WNSSKNSEKARRLSVDGRVSVGIERGFERMNMWGDVSEDQVPSGRMSSAGDGFGGGGGRRSDMEAAEVLGLDEMEEQMINFAATLNKGLPMRVPKVSKRQ GATICKGHKNYDLMLNLQLGIRHSVGRPGPVASLDLKASAFDPKEKVWTRFPPEGSKHTPPHSSTEFKWKDYCPLVFRSLRKLFNVDAADYMLSICGNDA LRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVLIRMLAAYYNHVRAFENTLVIRFYGLHCVKLTGPAQKKVRFIIMGNLFVSEYAIHRRFDLKGSSLG RITEKPESEINANTILKDLDLNFIFKLQKAWFQEFCRQVDRDCEFLEQERIMDYSLLVGLHFRDVSPIREIIPTKAEPPPKADVEREEGPRLSRADMDQL LLDPTKWARIRLGMNMPARVERTMRKNDYELQLVGEPTGEFYDVLLTFGIIDILQDYDISKKLEHAYKSIQYDPTSISAVDPKQYSRRFRDFIFRIFSED S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	0	1
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	1.0	0.8193
AT3G44150			unknown protein		Lus10023845 [exp]	2.0	0.7421
AT3G18790			unknown protein		Lus10008882 [exp]	9.6	0.6730
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	14.7	0.7273
					Lus10021816 [exp]	15.7	0.7592
					Lus10017290 [exp]	19.7	0.7318
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	23.1	0.7768
AT2G15220			Plant basic secretory protein ...		Lus10026584 [exp]	26.1	0.6951
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	36.0	0.7131
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	41.8	0.6877

Compare expression of checked genes

Lus10039011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.