Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57060 295 / 3e-90 binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039013 [exp] 369 / 3e-118 AT3G57060 1797 / 0.0 binding (.1.2) Lus10027308 [exp] 359 / 7e-115 AT3G57060 990 / 0.0 binding (.1.2) Lus10027307 [exp] 126 / 4e-35 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041500 [exp] 298 / 1e-91 AT3G57060 1903 / 0.0 binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039012 pacid=23150396 polypeptide=Lus10039012 locus=Lus10039012.g ID=Lus10039012.BGIv1.0 annot-version=v1.0 ATGGCTGTTTGCTTAGAAGATGATGAGGAGAGGATTTCAAGTCTAGCCAAACTTTTCTTCAGTGAATTATCTAAGAAAGGAGCCAATCCTATATACAATC TACTTCCAGATATACTTGGAAAACTATCCCATCAGAATCTGAAACAGGAGTCCTTCTGCAACATAATGCAGTTTCTATTTGGCTCTATAAAGAAGGACAA ACAAATGGAGGCTCTTGTTGAAAAGCTCTGTAACAGGTTCAGTGGAGTAACTGATTTTAAACAGTGGGAGTACATTGCCTACTGTCTTTCTCAGCTGACA TTTAATGAAAAAGGGATGAAAAAACATATCGAGTCATTCAAGACGTATGAGCATGTACTGTCCAAGGATTCTGTAATGGAGCACTTTAAAACCATAGTCA ACAAGAAGGCATTTAATACATGGTGCCAAAACAAATCAATCTTGGAGCAGGGTAAGAAGTTTGCGAAACCAGAAATGAAAGGTTGCATTGAGGAGTTCGA GGAAAAGCTTACTAAGTTCCATCTTGAGAAGAAGGAGCAAGAGGCCACTGCAAGAAATGCCCAAATTCATCAGGAAAAACTTGTTCGGAGGGGTGGTTTA GTTGCATCGAGTAACAATGGTGATGAAAGTGAAGAGTCCGATATTTCAGAAGAGGATGATACAGCTGAGCCAGCCATGGATGATACAGCTGAGTCAGCCG AGGATGCTACAGCTGAGCCAACCACCGATGATTCAGCTGAGCCAGTTATGGATGATGCAGCTGAGCCCGCCATGGATAATACTGCTGAGCCAGCCGTGGA TGATACTTCTCCATCTGTGAATGACCCATCAGATCTTAAATCCAACGCAACTGTTGAAGATTCAGGTCCCTCAAGTCAAGTGACAGCAGTTGAGTCAGAA CTCGATGACGATGAAGTCCAATCTATAAAAAGTCCTCCTAAATCTAGAAGGTCGAGAAAGAGCAGCGTGAAAGATCAAGGAACAATTCTCAATACATCCA CGAGAAGACGTACAAGGTCACAACTGAGGTAG
AA sequence Show only first row Show all	>Lus10039012 pacid=23150396 polypeptide=Lus10039012 locus=Lus10039012.g ID=Lus10039012.BGIv1.0 annot-version=v1.0 MAVCLEDDEERISSLAKLFFSELSKKGANPIYNLLPDILGKLSHQNLKQESFCNIMQFLFGSIKKDKQMEALVEKLCNRFSGVTDFKQWEYIAYCLSQLT FNEKGMKKHIESFKTYEHVLSKDSVMEHFKTIVNKKAFNTWCQNKSILEQGKKFAKPEMKGCIEEFEEKLTKFHLEKKEQEATARNAQIHQEKLVRRGGL VASSNNGDESEESDISEEDDTAEPAMDDTAESAEDATAEPTTDDSAEPVMDDAAEPAMDNTAEPAVDDTSPSVNDPSDLKSNATVEDSGPSSQVTAVESE LDDDEVQSIKSPPKSRRSRKSSVKDQGTILNTSTRRRTRSQLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57060			binding (.1.2)		Lus10039012 [exp]	0	1
					Lus10027307 [exp]	1.0	0.9668
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	2.0	0.9538
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	2.4	0.9509
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	3.0	0.9526
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	3.2	0.9519
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	4.8	0.9306
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	9.6	0.9523
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	9.8	0.9424
AT2G20635			ATP binding;protein kinases;pr...		Lus10033673 [exp]	10.7	0.9144
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	12.4	0.9445

Compare expression of checked genes

Lus10039012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.