Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57060 1755 / 0 binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027308 [exp] 1296 / 0 AT3G57060 990 / 0.0 binding (.1.2) Lus10039012 [exp] 378 / 9e-121 AT3G57060 299 / 8e-92 binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041500 [exp] 1857 / 0 AT3G57060 1903 / 0.0 binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039013 pacid=23150331 polypeptide=Lus10039013 locus=Lus10039013.g ID=Lus10039013.BGIv1.0 annot-version=v1.0 ATGGCTCTGCGCTTTACCTTTGCAAAAACTCTGCGATCTCTGGAAGATGAACACGACGACAGTCGCCTCTTTGCTCGGAACCCTATCGATGTTGCCTCTC TTTCACCGTCCCAACTGGAAGAGCTGGTCAAAGGTGTTGCTTTTGACCTGTCCGATAAGGAGCTATTCTGCATTGAAGAGCAAGATGTGTTTGACCGAGT GTACTCATTGGTTTCCAGCTTCTCTAGTCTGGCACCGTCTTATAAACTCATTCTCGTGGAGACTCTGCGCTCCAATCTAACTGTGCTTCTCCCCAGTGTT GATTTGCTTTCACGGGCCGGGGATGATGCTCCTTCTCTGATCGACAGGATTGCATCTCATCGAAATGCTTTTAAAATCTATTCATTTTTCCTCTTTCATA TAGTTCTACTGGAGGAATCCAGTGCCAGCAGTTCGATTAACAGTTCAAAGGCAACCACAGCTTCCAGGAAGAAGCAGGTTGTGCATTCATGGAACTGGGA GCCACAGAGGGTTCGGATACTCAATTTGATTGCCAATTCATTAGAGATCAACCTCTCACTTCTCTTCGGATCATCAGATCCAGATGAAAATTATCTCTCC TTCATTGTCAAAAATGCTCTAAGCATGTTTGAGAATTCAACACTACTGAAGGACTCGGAGACAAGAGCAGCTTTGGGTCGTATAGTTGGTACTTGTGCCA CTAAGTACCACTACACAGCACAGTCATCTGCTTCCATTATGCACTTAATCCACAAGCATGATTTTGTTGTCGCCCCCATGGCCGAGGCTGTTGCTTGGGC TGAAAAGAAGTATGCAGATGGAACCCTTGCCTGTTCGCTTATTAGGGAAATTGGGAGAACCAACCCAAAGGCTTACGTGAAGGACACTGCTGGTGCTGAT AATGTTGGATGTTTACTTGTGGAACTTGCTGAACGATTGCCAAATTTGGTCTCAACTAATATTGGGGTCGTGGTACCACATTTTGGAGGGGATTCTTACA AGATAAGGAATGCTTTGGTCAGCGTTTTGGGAAAACTAGTAGTAAAGGCATTTAAGGATTTGGAAGGTGAAGTGAGTTCAAAGTCAGTACGTCTCCGGAC CAAGCAAGCCATGTTGGAAATCTTACTTGAACGATGTCGAGATGTTGCTGCTTACACTAGGAGCAAAACACTACATGTTTGGGGCGAGTTATGTGAAGTG CATTCCATTTCAATCGGTCTATGGAATGAGGTTGCTATTGTTGCTACTGGAAGATTAGAGGACAAATCTTCCATTGTTAGAAAAGCTGCACTGAGTTTGC TTATCATGATGTTGCAACATAACCCATTTGGACCACAACTTCAAGTAGGTTCATTTGAAGCAACATTGGAGCAATACAGGAAAAAATTGAATGATCTTGA GCCAGATGAAAATGCTGAGACTGTGGATGATCTACCATCAGATAATAGTATCAGTGGAAGAGCAGCTGAAGTCGAACATGTAACTGCAGAAGGGAGGTCC AACGAGCAGCAAGAGAGTTTGTCTGACAGTGTGGCTCAGGTTGGAGAAGCAGAAGGGATTGCTCAGGAAATTTCAGTGCCAGATATTGGTAACCTGGAAC AGACTAGGGCGTTGGTTGCATCTCTTGAGGCTGGTCTGAAATTTTCCAAAAGCATTACTGCCGCTATGCCTACTCTTGTTCAGTTGATGGCTTCCTCTTC TGCTACGGATGTTGAAAACACAATTCTCCTGCTAATGAGGTGCAAGCAATTCCAAATCAGCGGTGCAGAAGCCTGCCTTAGGAAGATGCTGCCACTGGTC TTCTCTCAAGAGAAATCTATCTATGACACTGTGGAGAGTGCATTTATCACAATATACATGAAGGCTAGCCCAGTAGATATTGCTAAGAATCTTTTGAATC TTGCTATTGATTCAAATATTGGAGATCTTGCAGCTCTGGAGTTTATTATAAGCAACTTGGTGTCCAAAGGCTATTTATCTAACAATGCGATAACAGCCCT ATGGGACCATTTTTGCTTCAATATAAGTGGAACCACTGCAGAGCAAAGTCGAGGAGCTTTGTCAGTCCTTTGCATGGCTGCAATTTCTTGCAATGGAATC CTTGGATCTCATTTGCAAGATATAATTGATATTGGTTTTGGTCGCTGGGCTAAAGTTGATCCTCTGCTTGCCAGAACTGCATGTGTTGCCATTCACAGAC TTTCTGAAGAGGACAGGAAAAAGATGCTGGCCAATAACGGTAGCCGAGTGTTCAGTTTACTCGGAAGTTTGGTCACTGGTTTCTGGCTTCCAGATAGCAC GTGGTATTCTGCTGCTGATAAAGCTATCAGTGCTGTATATACAACCCATCCAACTCCAGAAACCTTTGCTGTTGATCTGGTGAAGAAATCACTTATTTCT GTTTTCCAAAAAGGTGTGGAAGATGACTTGCAAAATGAAGTTGAGGATGGTCCAACCACTGCTCTTACAGAAGTCCAAGTAGCAAAACTTAGTAGGTTCT TGTTTATAGTCAGTCATGTGGCCATGAATCATATGCTGTACATAGAATCTTGTATTAGGAAGGTCCAGAAGCAGAGGACTTCAAAAGAGATGGCTTCTGA GAGTCAGAAAGATGACACTACTGGTGCAGTTAAGGATGACAATATCAATGATGAGCTCGGTGTTTCTGCCTCTGAAGATGCAATAATCGATTCTCTATCT GAAAGATCAGAGAAAGAAATCGTATCTGGTGGTTCCATTGACAAGAATTTGATAGGATTATGTGCTCCTTTCTTATCAAAGCTTTGTAGAAACTTCACCC TGATGCAAAAGTATCCAGAGCTACAGGCATCAGGCATGCTTGCTCTTTGTCGATTAATGATCATTGATGCTGATTTTTGTGAATCAAATCTTCAGCTTCT ATTCACAGTGGTGGAAAATGCGCCATCAGAAACAGTTCGTTCAAATTGTACAGTTTGTCTTGGTGACTTGGCTGTCCGGTTTCCTAATTTGCTAGAACCA TGGACAGAGAATATGTATTTCCGATTACGAGATCCTTCGGTTTCAGTCAGGAAAAATGCAGTGCTCGTTCTCTCACACCTCATTTTAAATGACATGATGA AGGTAAAAGGTTATATAAACGAGATGGCTGTTTGCTTAGAAGATGATGAGGAGAGAATTTCAAGTCTAGCCAAACTTTTCTTCAATGAGTTATCTAAGAA AGGAGCCAATCCTATATATAATCTACTTCCAGATATACTTGGAAAACTATCCCATCAGAATCTGAAACAGGAGTCCTTCTGCAACATAATGCAGTTTCTA TTTGGCTCTATAAAGAAGGACAAACAAATGGAGGCTCTTGTTGAAAAGCTCTGTAACAGGTTCAGTGGAGTAACTGATTTTAAACAGTGGGAGTACATTG CCTACTGTCTTGCTCAGCTGACATTTACTGAAAAGGGTATGAAAAAACTTATCGAGTCATTCAAGACGTATGAGCATGTACTGTCCAAGGATTCTGTAAT GGAGCACTTTAAAACCATAGTGCACAAGGGTAAGAAGTTTGCGAAACCAGAAATGAAAGGTTGCATTGAGGAGTTCGAGGAAAAGCTTACTAAGTTCCAT CTTGAGAAGAAGGAGCAAGAGGCCACTGCAAGAAATGCCCAAATTCATCAGGAAAAACTTGTTCGGAGGGGTGGTTTAGTTGCATCGAGTAACAATGGTG ATGAAAGTGAAGAGTCCGATATTTCAGAAGGTTGGTAG
AA sequence Show only first row Show all	>Lus10039013 pacid=23150331 polypeptide=Lus10039013 locus=Lus10039013.g ID=Lus10039013.BGIv1.0 annot-version=v1.0 MALRFTFAKTLRSLEDEHDDSRLFARNPIDVASLSPSQLEELVKGVAFDLSDKELFCIEEQDVFDRVYSLVSSFSSLAPSYKLILVETLRSNLTVLLPSV DLLSRAGDDAPSLIDRIASHRNAFKIYSFFLFHIVLLEESSASSSINSSKATTASRKKQVVHSWNWEPQRVRILNLIANSLEINLSLLFGSSDPDENYLS FIVKNALSMFENSTLLKDSETRAALGRIVGTCATKYHYTAQSSASIMHLIHKHDFVVAPMAEAVAWAEKKYADGTLACSLIREIGRTNPKAYVKDTAGAD NVGCLLVELAERLPNLVSTNIGVVVPHFGGDSYKIRNALVSVLGKLVVKAFKDLEGEVSSKSVRLRTKQAMLEILLERCRDVAAYTRSKTLHVWGELCEV HSISIGLWNEVAIVATGRLEDKSSIVRKAALSLLIMMLQHNPFGPQLQVGSFEATLEQYRKKLNDLEPDENAETVDDLPSDNSISGRAAEVEHVTAEGRS NEQQESLSDSVAQVGEAEGIAQEISVPDIGNLEQTRALVASLEAGLKFSKSITAAMPTLVQLMASSSATDVENTILLLMRCKQFQISGAEACLRKMLPLV FSQEKSIYDTVESAFITIYMKASPVDIAKNLLNLAIDSNIGDLAALEFIISNLVSKGYLSNNAITALWDHFCFNISGTTAEQSRGALSVLCMAAISCNGI LGSHLQDIIDIGFGRWAKVDPLLARTACVAIHRLSEEDRKKMLANNGSRVFSLLGSLVTGFWLPDSTWYSAADKAISAVYTTHPTPETFAVDLVKKSLIS VFQKGVEDDLQNEVEDGPTTALTEVQVAKLSRFLFIVSHVAMNHMLYIESCIRKVQKQRTSKEMASESQKDDTTGAVKDDNINDELGVSASEDAIIDSLS ERSEKEIVSGGSIDKNLIGLCAPFLSKLCRNFTLMQKYPELQASGMLALCRLMIIDADFCESNLQLLFTVVENAPSETVRSNCTVCLGDLAVRFPNLLEP WTENMYFRLRDPSVSVRKNAVLVLSHLILNDMMKVKGYINEMAVCLEDDEERISSLAKLFFNELSKKGANPIYNLLPDILGKLSHQNLKQESFCNIMQFL FGSIKKDKQMEALVEKLCNRFSGVTDFKQWEYIAYCLAQLTFTEKGMKKLIESFKTYEHVLSKDSVMEHFKTIVHKGKKFAKPEMKGCIEEFEEKLTKFH LEKKEQEATARNAQIHQEKLVRRGGLVASSNNGDESEESDISEGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57060			binding (.1.2)		Lus10039013 [exp]	0	1
AT3G57060			binding (.1.2)		Lus10027308 [exp]	1.0	0.9910
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	1.4	0.9748
AT1G04650			unknown protein		Lus10011755 [exp]	2.4	0.9616
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	3.5	0.9674
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	5.3	0.9596
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	5.7	0.9633
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	6.2	0.9500
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10014315 [exp]	8.7	0.9623
AT5G04460			RING/U-box superfamily protein...		Lus10038390 [exp]	8.8	0.9384
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	9.8	0.9584

Compare expression of checked genes

Lus10039013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.