Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16660 1161 / 0 heat shock protein 70 (Hsp 70) family protein (.1) AT5G28540 224 / 3e-62 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 223 / 6e-62 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G42020 221 / 4e-61 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 221 / 7e-61 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 217 / 4e-60 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT1G11660 218 / 2e-59 heat shock protein 70 (Hsp 70) family protein (.1) AT5G02490 216 / 3e-59 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 215 / 5e-59 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 213 / 3e-58 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027310 [exp] 1503 / 0 AT4G16660 1275 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10040078 [exp] 232 / 3e-64 AT1G11660 919 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017306 [exp] 232 / 3e-64 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10019627 [exp] 228 / 1e-62 AT1G11660 916 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10005953 [exp] 222 / 2e-61 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 221 / 4e-61 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10023043 [exp] 223 / 3e-59 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10021345 [exp] 212 / 5e-59 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10025333 [exp] 214 / 1e-58 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G022100 [exp] 1179 / 0 AT4G16660 1229 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.016G019800 [exp] 1165 / 0 AT4G16660 1178 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 228 / 3e-63 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 227 / 5e-63 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 224 / 3e-62 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042600 [exp] 223 / 8e-62 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.013G018000 [exp] 223 / 1e-61 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 220 / 8e-61 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 219 / 2e-60 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 219 / 2e-60 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10039014 pacid=23150666 polypeptide=Lus10039014 locus=Lus10039014.g ID=Lus10039014.BGIv1.0 annot-version=v1.0 ATGGACCAACACAACCGGGCTCCGATGACCAATGAACAACACACCCGGGCTTCTCACACTCCGCCACGTGTACCCATCGCCACTTGTCCATCCTTCATTG GCTCCAGTTCCTCATCACAACGAAACCAGCCACTGAGAAAGTCCTCCGCGTCAGCTTATATATATAATAACGAAAAACGTTTCACATCGTTTCCAGGAAA AATAACGGCTCCCGCATCTCACAGCCTTTCTTCCTCTTCATTCGCCGATTTCCAGCTGAGCTCCTCAGCAGCCCAAGCTGAGAAAAATCCACCTCCCACT GCTTCTGGCTCTTATTCAGTAGTTACTGATCCGTTAATGGCGGAATTACAGGGAAGGAGAGCGGCGGATTTGGGCTGTTTGTTTCTCATTTCTCGATCCA TGCCGACGATGCTGATCAAATTGGGGTTGCTTCTCTGCTTCATTTCTGTAAACTTAATCCCGTCCCAATCGGCCGTCTCCAGCATAGATCTAGGGTCGGA ATGGATGAAAGTAGCTGTAGTGAATCTCAAACCAGGTCAATCCCCGATTGCCATCGCGATCAATGAAATGTCAAAGCGCAAGTCTCCCGCCTTAGTGTCG TTCCACTCTGGTACGCGTCTCCTCGCCGAGGAGGCTGCCGGGATCACAGCTCGTTACCCTAATAAAGTGTTCTCGCAGCTGCGGGATATGATAGGGAAAC CGTACAAGGATGTGAAGGTAGTTTTGGATTCAATGTACCTGCCGTTTGAGGCTGTGGAGGATTCCAGGGGATCCGTTGCGTTTAAGGTTGATGACGGCCA AGTTTATTCCGTTGAGGAATTGTTGGCTATGGTTTTGGGATACGCTTCGAATTTGGCTGAGGTACATGCCAAGCTACCTGTGAAGGATGCTGTCATTAGC GTGCCGCCGTATTTTGGTCAGGCGGAGAGGAGAGGGTTGATTCAGGCAGCTCAGCTGGCTGGGATTAATGTTCTTACGTTGATGAATGAGCATTCTGGTG CGGCATTGCAGTACGGGATTGATAAAGATTTCTCAAATGGATCGAGATATGTGATATTCTATGATATGGGTTCGAGTAGTACTTATGCTGCACTAGTCTA TTATTCGGCCTACAACACCAAGGAGTATGGGAAGACTGTGTCTGTCAATCAGTTTCAGGTTAAGGATGTTAGATGGAATTCGCAGCTTGGAGGTCAGAGC ATGGAAATGCGGTTGGTGGAATACTTTGCAGATGAATTTAACAAGCAAGTTGGAAATGGAGTTGATGTGCGGAAGTCTCCCAAGTCGATGGCTAAACTGA AGAAGCAGGTTAAGCGGACAAAGGAAATATTGAGCGCAAACACAGCGGCTCCAATATCAGTTGAATCTCTATATGACGATCGGGATTTTAGGAGCACTAT TACACGGGAGAAGTTTGAAGAGTTATGTGGTGATCTGTGGGACAGATCCCTTCTCCCCATCAAAGAAGTAATGAAGCATTCAGACCTGAAAGTGGATGAT ATATCTGCTGTAGAGCTTATTGGAGGTGCCACAAGGGTGCCAAAGTTGCAGGCTAAGATCCAAGAATTTCTTGGAAGAAACGAGCTGGACAAACATCTGG ATGCAGATGAAGCTATAGTTCTTGGTGGAGCATTGCATGCTGCAAATTTAAGTGATGGAATTAAATTGAACCGCAAGCTAGGAATGATTGATGGTTCTCC ATATGGATTGTCCGTTGTACTGGATGGGCCAGACATGAAAGATGAGTACTCTAGGCAGTCACTGGTGCCTAGAATGAAAAAGGTTCCCAGTAAGATGTTC AGATCCATCGTCCACAACAAAGATTTTGAAGTTTCACTTGAATATGAAACTGAGGAAATTTTACCACCCAGCATAAGCTCTCCAGTGTTCGCCCAGTATT CTGTGTCTGGTCTTACTGAGGCGAGTGAGAAGTATTCATCACGGAATCTTTCCTCCCCTGTTAAGGCAAGTCTGCATTTCTCAATCAGTAGAAGTGGTGT TCTCTCGTTGGACAGAGCAGATGCTGTTATTGAGATATCAGAGTGGGTAGAAGTCCCAATAAAAAAGAATCTTACCCTTGAAACTATCACCAACTCTTCA AGTAGTTCTCCAGAAACTACCGAGAATACCACAACTAGCTCCACAACTGAGAGTTCTTCGGAGGAAAGTAATGAAAACCTACAATCTGATGGTGCAGCGG GCAACGAATCTAACCCAGATGTCAAAGAACCAATTACCACTGAAGCGGCTACAGAAAAGAAGTTGAAGAAGCGGACTTTCAGGGTTCCATTGAAGATCAC CGAAAAGACAGCAGGACCTGGAAAGCCTCTTTCAGAAGAATCTTTGGCTGAAGCTAAAAAGAAGCTTGAAGAATTGAACAAGAAGGACTCAGAGCGACGA AGAACTGCTGAGTCGAAGAATAACTTGGAAGGATATATATACTCGACAAAAGAAAAGCTCGAAACAGACGAAGAGATCGAGAAGATATCTTCTAGTGAAG AACGCCAATCATTCATTGAAAAGCTTGATGAAGTTCAAGACTGGCTATACATGGATGGTGAAGATGCAATTGCCAGTGAGTTTGAGAAACGTTTGGAGTC CTTGAAAGTCATCGGTGACCCGATTTTTTTCAGACACAAGGAGCTCACAGATAGGCCAGCTGCAACGCAACTTGCTAGGAAATACCTCAGTGAGCTGAAA CAGATTGTAGAAGGTTGGGAGGCAAACAAACCTTGGCTCCCTAAGGATAAAATAACCGAGGTTGTGAACGATGCGGAAAAGTTGAAGAGTTGGCTTGATG AGAAGGAGGCTGAGCAGAAGAAGACTTCCGGATCCAGCAAGCCAGCCTTTACGTCTGAAGAAGTGTACACCAAAGTGTTCAAATTGCAAGACAAGGTTAC TAGCATTAACAGAATTCCGAAGCCAAAGCCTAAAGTCGAGAAGCCCAAGAAGAACGAGACAGAGGAGCCTTCTAAGAAGGCTGAGACGGAAGAACCTAAG AAGACAGATTCTGAGAAGAGCAGCGAGAGTTCGGAGAAAACCACTGGCTCTGATGGTGACAAAAATGGCGAAGATACTAAGCCACACGACGAGTTGTGA
AA sequence Show only first row Show all	>Lus10039014 pacid=23150666 polypeptide=Lus10039014 locus=Lus10039014.g ID=Lus10039014.BGIv1.0 annot-version=v1.0 MDQHNRAPMTNEQHTRASHTPPRVPIATCPSFIGSSSSSQRNQPLRKSSASAYIYNNEKRFTSFPGKITAPASHSLSSSSFADFQLSSSAAQAEKNPPPT ASGSYSVVTDPLMAELQGRRAADLGCLFLISRSMPTMLIKLGLLLCFISVNLIPSQSAVSSIDLGSEWMKVAVVNLKPGQSPIAIAINEMSKRKSPALVS FHSGTRLLAEEAAGITARYPNKVFSQLRDMIGKPYKDVKVVLDSMYLPFEAVEDSRGSVAFKVDDGQVYSVEELLAMVLGYASNLAEVHAKLPVKDAVIS VPPYFGQAERRGLIQAAQLAGINVLTLMNEHSGAALQYGIDKDFSNGSRYVIFYDMGSSSTYAALVYYSAYNTKEYGKTVSVNQFQVKDVRWNSQLGGQS MEMRLVEYFADEFNKQVGNGVDVRKSPKSMAKLKKQVKRTKEILSANTAAPISVESLYDDRDFRSTITREKFEELCGDLWDRSLLPIKEVMKHSDLKVDD ISAVELIGGATRVPKLQAKIQEFLGRNELDKHLDADEAIVLGGALHAANLSDGIKLNRKLGMIDGSPYGLSVVLDGPDMKDEYSRQSLVPRMKKVPSKMF RSIVHNKDFEVSLEYETEEILPPSISSPVFAQYSVSGLTEASEKYSSRNLSSPVKASLHFSISRSGVLSLDRADAVIEISEWVEVPIKKNLTLETITNSS SSSPETTENTTTSSTTESSSEESNENLQSDGAAGNESNPDVKEPITTEAATEKKLKKRTFRVPLKITEKTAGPGKPLSEESLAEAKKKLEELNKKDSERR RTAESKNNLEGYIYSTKEKLETDEEIEKISSSEERQSFIEKLDEVQDWLYMDGEDAIASEFEKRLESLKVIGDPIFFRHKELTDRPAATQLARKYLSELK QIVEGWEANKPWLPKDKITEVVNDAEKLKSWLDEKEAEQKKTSGSSKPAFTSEEVYTKVFKLQDKVTSINRIPKPKPKVEKPKKNETEEPSKKAETEEPK KTDSEKSSESSEKTTGSDGDKNGEDTKPHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	0	1
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10027310 [exp]	1.0	0.8899
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	2.4	0.8185
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	6.2	0.6931
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	7.9	0.7153
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10023043 [exp]	9.6	0.7854
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	12.0	0.7299
AT4G27500		PPI1	proton pump interactor 1 (.1)		Lus10005546 [exp]	16.1	0.6351
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	23.5	0.7033
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	24.7	0.7381
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	32.3	0.7165

Compare expression of checked genes

Lus10039014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.