Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57050 666 / 0 CBL cystathionine beta-lyase (.1.2.3) AT3G01120 208 / 8e-61 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 187 / 1e-54 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G64660 135 / 4e-35 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027313 [exp] 899 / 0 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10030694 [exp] 209 / 3e-61 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 199 / 9e-58 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000880 [exp] 136 / 3e-35 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 122 / 5e-30 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 116 / 2e-28 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 111 / 1e-26 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 99 / 1e-22 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10001671 [exp] 63 / 2e-11 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038200 [exp] 723 / 0 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3) Potri.017G086500 [exp] 209 / 3e-61 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G084000 [exp] 127 / 6e-32 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G146600 [exp] 63 / 8e-11 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.003G187032 [exp] 56 / 1e-08 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10039016 pacid=23150270 polypeptide=Lus10039016 locus=Lus10039016.g ID=Lus10039016.BGIv1.0 annot-version=v1.0 ATGAGCAATTCCCAAGCATCCATACTTCTGCAGAAAAGCCCCTTCATTAGTACTCCTACGATTATCAGACCTTCACAGGCCCTTTGCTGCCGAGACTACA TTTCACTATCTGCACTCAGAAAGGACCTTAATTTACAACAGCGGAGTTCTAGATTAGCAGGAAACCTTTTAGTCCATTGCGTTATGGAGAAAGGAACAGA CTCAAGCACTTCCAGATTGGTTGACCCGGTGACAGAGCCTTTCAAGGATAATGATGTCAGGGAACCTAGTGTTTCGACCATGTTGATGAACTTTGAAAAC AAGTTTGATCCTTACGATGCAATGAGTGTGCCGCTTTACCAGACAGCCACATTTAAGCAGCCATCAGCAACTGAAAATGGCCCATATGATTATACTAGAA GTGGAAATCCTACTAGGGACGCTCTAGAAAGCTTGCTGGCAAAGTTAGATAAAGGGGACCGAGCGCTTTGTTTTACAAGTGGAATGGCTGCTTTGGCTGC AGTCAGTCATCTTCTTGGAGCTGGGGATGAAATTGTAGCTGGGGATGACATTTATGGTGGATCTGATCGATTGCTGTCACAAGTGATACCTAAAAATGGA ATTGTTGTGAAACGAGTAAACACAAGTAGCCTGGAAGACGTTGCATCTGCAATGGGGCCTCAGACAAAGCTTGTGTGGTTTGAAAGCCCAACAAATCCTC GTCAACAGATTTCTGATATTCGTAAAATTGCAGAGATAGCCCATGCACATGGTGCTCTTGTTTTGGTGGATAATAGCATTATGTCTCCTGTTCTGTCACA ACCATTAGAACTTGGGGCAGACATCGTGATGCACTCAGTCACTAAATTCATAGCTGGGCATAGCGATGTTATGGCCGGTGCACTTGTTGTCAAAGGAGAA AGCTTGGGGAAAAGATTGTACTTCTTACAAAATGCAGAAGGCACAGGGCTAGCCCCCTTTGATTGCTGGCTCTGCTTACGAGGTATCAAGACGATGGCTT TGCGTGTTGAGAAACAACAGGAGAATGCACAGAAGATAGCCGAGTTCCTTGCTTCACATCCCCGAGTTACAAGGGTTAGCTATGCCGGGCTTCCCGGTCA TCCTGGTCGCGAATTGCACTATTCCCAGGCAAAGGGTGCAGGATCGGTGCTAAGCTTTTTGACAGGATCGCTTGCTCTTTCTAAGCATGTCGTCGAGACT GCCAAGTACTTCAGCGTGACGGTCAGCTTCGGAAGTGTGAAGTCGCTCATAAGCATGCCTTGCTTCATGTCACATGCAAGCATCCCGGCTGCTGTCCGGG AAGCCAGAGGTCTGACCGATGATCTGATTCGGGTTTCTGTGGGGATTGAAGATGTCGATGATCTCATCGCCGATCTAGACTTGGCACTAAAAACTGGACC TCCATAA
AA sequence Show only first row Show all	>Lus10039016 pacid=23150270 polypeptide=Lus10039016 locus=Lus10039016.g ID=Lus10039016.BGIv1.0 annot-version=v1.0 MSNSQASILLQKSPFISTPTIIRPSQALCCRDYISLSALRKDLNLQQRSSRLAGNLLVHCVMEKGTDSSTSRLVDPVTEPFKDNDVREPSVSTMLMNFEN KFDPYDAMSVPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKGDRALCFTSGMAALAAVSHLLGAGDEIVAGDDIYGGSDRLLSQVIPKNG IVVKRVNTSSLEDVASAMGPQTKLVWFESPTNPRQQISDIRKIAEIAHAHGALVLVDNSIMSPVLSQPLELGADIVMHSVTKFIAGHSDVMAGALVVKGE SLGKRLYFLQNAEGTGLAPFDCWLCLRGIKTMALRVEKQQENAQKIAEFLASHPRVTRVSYAGLPGHPGRELHYSQAKGAGSVLSFLTGSLALSKHVVET AKYFSVTVSFGSVKSLISMPCFMSHASIPAAVREARGLTDDLIRVSVGIEDVDDLIADLDLALKTGPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10039016 [exp]	0	1
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	13.8	0.8170
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	27.7	0.7381
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	32.0	0.7506
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10032043 [exp]	45.5	0.7493
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	48.7	0.7550
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	49.0	0.7633
AT1G34380			5'-3' exonuclease family prote...		Lus10039380 [exp]	66.9	0.7376
AT3G16840			P-loop containing nucleoside t...		Lus10004404 [exp]	71.6	0.7257
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10021666 [exp]	131.7	0.6667
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	151.3	0.7167

Compare expression of checked genes

Lus10039016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.