Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15000 210 / 2e-71 Ribosomal L27e protein family (.1.2) AT3G22230 209 / 7e-71 Ribosomal L27e protein family (.1) AT2G32220 201 / 1e-67 Ribosomal L27e protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027314 [exp] 237 / 4e-82 AT4G15000 233 / 2e-80 Ribosomal L27e protein family (.1.2) Lus10010461 [exp] 224 / 7e-77 AT4G15000 236 / 7e-82 Ribosomal L27e protein family (.1.2) Lus10003814 [exp] 223 / 2e-76 AT4G15000 239 / 7e-83 Ribosomal L27e protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019000 [exp] 216 / 5e-74 AT4G15000 209 / 5e-71 Ribosomal L27e protein family (.1.2) Potri.006G021500 [exp] 213 / 8e-73 AT4G15000 205 / 2e-69 Ribosomal L27e protein family (.1.2) Potri.001G342500 [exp] 208 / 9e-71 AT4G15000 210 / 2e-71 Ribosomal L27e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01777 [flax] [poplar] Ribosomal_L27e Ribosomal L27e protein family CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10039017 pacid=23150417 polypeptide=Lus10039017 locus=Lus10039017.g ID=Lus10039017.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCATGAAGCCCCACAAGGCGGTGATCGTCCTCCAAGGCCGGTACGCCGGGAAGAAGGCGGTGATCGTGAAGAACTTCGACGACGGAGTTC GCGACCGCGCCTACGGCCACTGTTTGGTTGCAGGGATCAAGAAGTACCCGGGCAAGGTTATCAGGAAGGATTCGGCCAAGAAGACCGCCAAGAAGTCCAG AGTCAAGTGCTTCGTGAAGCTCGTGAACTACAGGCATCTGATGCCGACTAGGTACACCCTGGATGTGGACTTGAAGGACGCCGTATCCATCGAATCCCTG GCGAGCAAGGAGAAGAAGGTCGCCGCCTGCAAGGACGCCAAGGCCAAGTTCGAGGAGAGGTTCAAGACCGGCAAGAACAGGTGGTTCTTTACCAAACTCA GGTTTTAG
AA sequence Show only first row Show all	>Lus10039017 pacid=23150417 polypeptide=Lus10039017 locus=Lus10039017.g ID=Lus10039017.BGIv1.0 annot-version=v1.0 MVKFMKPHKAVIVLQGRYAGKKAVIVKNFDDGVRDRAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKCFVKLVNYRHLMPTRYTLDVDLKDAVSIESL ASKEKKVAACKDAKAKFEERFKTGKNRWFFTKLRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	0	1
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	1.0	0.9481
AT3G16080			Zinc-binding ribosomal protein...		Lus10011446 [exp]	2.0	0.9257
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	2.0	0.9076
AT3G53430			Ribosomal protein L11 family p...		Lus10015086 [exp]	2.4	0.8907
AT1G26740			Ribosomal L32p protein family ...		Lus10008442 [exp]	2.4	0.9135
AT4G15000			Ribosomal L27e protein family ...		Lus10027314 [exp]	3.2	0.9062
AT1G73940			unknown protein		Lus10017355 [exp]	5.7	0.8512
AT5G04800			Ribosomal S17 family protein (...		Lus10021307 [exp]	6.7	0.8501
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	7.1	0.8190
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	8.1	0.8496

Compare expression of checked genes

Lus10039017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.