Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78780 288 / 5e-99 pathogenesis-related family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037316 [exp] 274 / 5e-93 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4) Lus10027315 [exp] 239 / 8e-81 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4) Lus10018919 [exp] 207 / 4e-67 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4) Lus10029763 [exp] 199 / 7e-64 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4) Lus10035732 [exp] 181 / 2e-57 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4) Lus10042792 [exp] 102 / 1e-27 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4) Lus10028620 [exp] 45 / 2e-06 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G389800 [exp] 296 / 5e-102 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4) Potri.011G108900 [exp] 294 / 4e-101 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4) Potri.001G389400 [exp] 288 / 6e-99 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4) Potri.005G188400 [exp] 219 / 6e-72 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4) Potri.005G188300 [exp] 218 / 3e-71 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039018 pacid=23150582 polypeptide=Lus10039018 locus=Lus10039018.g ID=Lus10039018.BGIv1.0 annot-version=v1.0 ATGGCCGGAGGGATTGGAGAAAAGTACAGATCTTTCATGTCCGCCGATGAAACTGCAGACGGCGGCGACGGCGGCAAAACTCAATGGAGGCACGGCGCTC CTCCCCAGTACGATGTCGTCAACACGCTCTTCGAACAAGAACGAACCCAGGTGTGGGGAGAAGGATCTGTGGAAGAAATAGTGCAGAACGCGGTGAAGTC GTGGGAGATGGAGTTTTCCCACAAAGTTCGTCTCCAGGACTTCAAGACCATCGATCCAACCAAATTTAGCCTCGTCGTTAATGGGAAAGAGGGGATGTCA GCAGAAGAAACCCTGAAAACAGGGAGCTACAACGCACTGCTGAAGAATCACAAGCTCGAGAAACATCTGCAGCTGTACAAAGCAGAGGACGAGACGTTCG AGTCATCCCACGAAGCATTTGCATCGGCTTTCCCCAGAGGATTTGCTTGGGAAGTGATCTCTGTCTACTCCGGGCCACCGGTGGTGGTGTTCAAGTTCAG GCATTGGGGCCATTTCGAAGGACCTTTCAAGGGCCACTCTCCCACCGGAGACACCGTCGAGATGTTCGGCGTCGGAGTTCTGAAAGTGGATGAGAAGCTA GTAGTGGAAAGAGTGGAGGTTTACTATGATCCAGCGGATCTCATCGGGGGCCTGTTCAAAGGAGGAGGAGGACCGCCGGATTCGACATCTGTGCCCAAAG GATCGTCGTGTCCCTTCGCTACATAA
AA sequence Show only first row Show all	>Lus10039018 pacid=23150582 polypeptide=Lus10039018 locus=Lus10039018.g ID=Lus10039018.BGIv1.0 annot-version=v1.0 MAGGIGEKYRSFMSADETADGGDGGKTQWRHGAPPQYDVVNTLFEQERTQVWGEGSVEEIVQNAVKSWEMEFSHKVRLQDFKTIDPTKFSLVVNGKEGMS AEETLKTGSYNALLKNHKLEKHLQLYKAEDETFESSHEAFASAFPRGFAWEVISVYSGPPVVVFKFRHWGHFEGPFKGHSPTGDTVEMFGVGVLKVDEKL VVERVEVYYDPADLIGGLFKGGGGPPDSTSVPKGSSCPFAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10010862 [exp]	1.0	0.9526
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	2.4	0.9485
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10028215 [exp]	3.5	0.9409
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	3.5	0.9462
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002888 [exp]	7.1	0.9016
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	7.5	0.9246
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	7.7	0.9429
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	8.7	0.9456
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	9.4	0.9263
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039813 [exp]	11.2	0.9177

Compare expression of checked genes

Lus10039018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.