Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35540 220 / 2e-64 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 172 / 5e-47 Domain of unknown function (DUF3444) (.1) AT2G05230 168 / 5e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 168 / 5e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 166 / 3e-44 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 162 / 4e-43 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 134 / 3e-34 Domain of unknown function (DUF3444) (.1) AT5G18750 132 / 2e-32 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 125 / 9e-31 unknown protein AT5G18730 119 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027316 [exp] 835 / 0 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 178 / 4e-48 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 173 / 2e-46 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10014927 [exp] 157 / 6e-41 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 156 / 8e-41 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 147 / 4e-37 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 145 / 6e-37 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 144 / 2e-36 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 140 / 5e-35 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097800 [exp] 304 / 7e-96 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 187 / 3e-51 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 184 / 1e-50 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 181 / 5e-49 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 179 / 2e-48 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 178 / 2e-48 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 176 / 1e-47 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 174 / 8e-47 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 174 / 9e-47 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 163 / 1e-42 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10039019 pacid=23150285 polypeptide=Lus10039019 locus=Lus10039019.g ID=Lus10039019.BGIv1.0 annot-version=v1.0 ATGGCGGAGGCGGAATTCTCAGCCTCCAACCTAAAATCAGCACTGAAGCACGCTAAGAAAGCACACCGCCTATCTCCAAACCTCGACGGCCTATCTTCAA TGCTCACCTCCCTCAAGATTCTGCGGTTCGCAAACTCCGATTTCACCGATTGGTACAGCATTCTCCAGGTAGACCCTTTCTCCCACATCACCACTATCAA AAAGCACTACAAGAAGCTCGCGTTGCTTTTGCACCCCGATAAGAACAATTTCCCCGGCTGCGAGGACGCCTTTAAGCTATTAGGCCAGGGGATTAGGGTT CTGTCTGATAAAATCGCGAGGAAAGAGTTTGATTCGGCTTTGAGGCTTAGGATTCAGGAGGCTAGTTATAATCAGGAGGAGGAAGACAACTCCATCTCTG CTGCTGTGGTGGAGACGTTTTGGACGTCCTGCTCCAGGTGTAGGCTTCTGCATCAGTTTGATAGGCAGTATCTGGGGCATAATTTGGTTTGCCCTAACTG TAACAAGAGCTTCGAGGCGTTGGAGGTTGAAGAAGGCAATAATGTGGATGAGGGATCTGAAGGTGATTGTGGCAATGGTGAAGAAGAAGAAGATGGAACT AGAGAATGGGGTGATGGAAGGTTGAGGATTAGGGATTTGAGGAGGAAATGGAGTCATGATGACAAGGTTTCGGAGAGGTCTATCTCGAAGAAGACGGTAA GATTAGATGATGATGATGAAGAAGAAACAATGACATTAGCTGAATTACAGTTGCGAGCTAAGCGAAAGGCCAAAGGGAAGCAAAATCAAGAAGAGATGAA TAACGAAACAGTTCCGACATCAAAGAAGAGTAGAAGAACTCGGGAGTCCGAGAAGAAGAAATCTGTATGGTTGCAGAAGTGTATGAATGATGATGGTCCA GAGATGATGGAGGTCGAGGATTCGGACTTCTACGACTTCGATATCGACAGAGGAGAGAAGAGCTTCAAGAAGGGGCAAGTGTGGGCTATCTACGACGATA TCGATGGGATGCCACGGCATTACGGTTTGATCGAGGAGGTTGTTTCGGTAAAACCCTTTGAAGTGAAGTTGAGTTGGCTTGATCTCGTCGATAATGGAGA CGAGAGGTTGATTAGTTGGACGAAAATAGGATTGCAGGTATCTTGCGGGAGCTTCAAGGTTGCGAAGAAGATGACTGTGGATTCCTTGAACATCTTCTCG CATTTGCTGACATGTGAGAGGGCAGCAAGAGAAGTCTACAGAATTTATCCAAACAAAGGTTCGGTATGGGGGGTTTACGGTGAAAAGATTCCGGGTTCGG GAGAAGAACCATCGTATGAGTTTGCTGTGGTTCTGAGTAATTACAGTGACTTCCATGGACTCAGTATGGCTTACCTAGATAAGGTGGATGGGTTCAAAAC TGTGTTCAAACGTAGAGAAATCGGCTTCCATGCTGTGAAATATGTGAAGAAAGGTGGTCTTGAGTTGTTTTCGCACCAAATTCCTGCAAGGAAGCTCTCA ACTGAAGAAATCCCTGATCTTCCAAGAGATTGCTGGGAGCTTGATCCGGCTTCTTTGCCATCGGTGTTGCTGCGCATTGGTAACGGATAA
AA sequence Show only first row Show all	>Lus10039019 pacid=23150285 polypeptide=Lus10039019 locus=Lus10039019.g ID=Lus10039019.BGIv1.0 annot-version=v1.0 MAEAEFSASNLKSALKHAKKAHRLSPNLDGLSSMLTSLKILRFANSDFTDWYSILQVDPFSHITTIKKHYKKLALLLHPDKNNFPGCEDAFKLLGQGIRV LSDKIARKEFDSALRLRIQEASYNQEEEDNSISAAVVETFWTSCSRCRLLHQFDRQYLGHNLVCPNCNKSFEALEVEEGNNVDEGSEGDCGNGEEEEDGT REWGDGRLRIRDLRRKWSHDDKVSERSISKKTVRLDDDDEEETMTLAELQLRAKRKAKGKQNQEEMNNETVPTSKKSRRTRESEKKKSVWLQKCMNDDGP EMMEVEDSDFYDFDIDRGEKSFKKGQVWAIYDDIDGMPRHYGLIEEVVSVKPFEVKLSWLDLVDNGDERLISWTKIGLQVSCGSFKVAKKMTVDSLNIFS HLLTCERAAREVYRIYPNKGSVWGVYGEKIPGSGEEPSYEFAVVLSNYSDFHGLSMAYLDKVDGFKTVFKRREIGFHAVKYVKKGGLELFSHQIPARKLS TEEIPDLPRDCWELDPASLPSVLLRIGNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	0	1
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	5.1	0.8154
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001372 [exp]	6.6	0.8241
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	17.8	0.7685
AT4G12130			Glycine cleavage T-protein fam...		Lus10032204 [exp]	19.3	0.7648
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10014178 [exp]	25.3	0.7585
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10008305 [exp]	26.8	0.7929
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	33.0	0.7836
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011567 [exp]	37.8	0.7177
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	47.7	0.7363
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	52.8	0.6664

Compare expression of checked genes

Lus10039019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.