Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49730 212 / 4e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 201 / 7e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 200 / 3e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 198 / 9e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 194 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G11310 192 / 6e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 188 / 4e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 180 / 9e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 179 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G80550 176 / 4e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027318 [exp] 587 / 0 AT3G49730 140 / 8e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 206 / 2e-59 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 200 / 1e-57 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 199 / 4e-57 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011459 [exp] 191 / 4e-54 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008102 [exp] 192 / 5e-54 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013139 [exp] 186 / 9e-52 AT5G11310 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 187 / 1e-51 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 185 / 3e-51 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066700 [exp] 766 / 0 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 220 / 6e-65 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 208 / 2e-60 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 202 / 2e-58 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 197 / 3e-56 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G247400 [exp] 196 / 3e-55 AT5G11310 638 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 194 / 5e-55 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 195 / 1e-54 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 188 / 2e-53 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083900 [exp] 189 / 6e-53 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039021 pacid=23150581 polypeptide=Lus10039021 locus=Lus10039021.g ID=Lus10039021.BGIv1.0 annot-version=v1.0 ATGGCAATCGAATTGCTACGGCATACCGCCACCGTTACTCGCCACAAACGCATCATCCTCCTCCATCTCCGCCGCAGCTCCTCCTCTTCCTCCTCCGCCG CCGCTGCCGCTGCCGAACTTCCCACCCTTCAACCCTCCGGCGATGCCGACTTACTCTCCCAAATGCTTCTACACCACCACAACCCTTTCCACGCTATGGA ATCATGTCTCCAACTCCACGGCATCTCTCTCACACCATCCCTACTCCACCAAACCCTCCTCCGCCTCCGCCACTCCTCCAAAATCGCCCTCTCGCTCTTC CACTACTCCCTCTCCCTCCCTTCCGCTTCCACCGACGTCACCACCGCCAGTTACAACCTCATCATCGACATCCTCGCCAAAGTCCGTCAGTTCGACGTCT GTTGGCAGCTCATCATCCAGATGGGCCAGCAGGACAACAACAACGAGGACGAGGATTGCAATTTCCATTGCCGCCCTAATTTCCTCACCTTCTCAATCCT AATCCGCCGATTGATTGCCGCTGGCTTCACCCGTCAAGCCATCCGTGCTTTCGACGATATGCAGGCTTTTCTCCCGCAAGGTACGGCGGTGGACGAGACT CATTTCTGTTTCCTGCTCGACACTCTCTGCAAGTACGGTTATGTGAAAGTCGCCGTCGAGATATTCAACAAAAGGAAGTTCAGTTTCAACCCCAATGTCA GGATGTACACTGTGCTTATATACGGGTGGTGCAAGCTTGGGAGGTTTGACATGGCGGAGAGGTTTCTAAGAGAGATGGATGAGAGGGGAATCGAACCTAA TGTTGTCACTTACAACGTCTGGTTGAATGGGATTTGCAGGAGGGCTAGATTGCAGCCGGAGTTCAAATTTGAAAAGACAATAGTTTTGGCAGAGAAGGTG TTCGACGAAATGCGTCAAAGAGGGATCGAGCCAGATGTCACAAGCTTTTCCATCGTGCTTCATGTCTATAGCAGGGCGCATAAACCTGAACTCACTATGG ATAAGTTGAAGCTAATGAAAGAGAAGGGTATTTCTCCAACTGTGGCCACCTACACTTCAGTGATCAAGTGCCTCACCTCGTCGGGGAGAATCGATGATGC AGAGAAGTTGCTGGATGAGATGGTAGTGAACGAGGTAAGCCCCTCTGCAGTAACTTACAATTGTTTTCTCAAGGAATACCGTGGCCGGAACGATGTGGAA GGTGCATTGAAGTTGTACAGGAAGATGAGGGATCAATGCATGCCGAGTTTGCAAACCTACAACATCTTGTTGGGAATGTTTGTGAAACTAAATCGCATGG ACATTGTCAACGAGATTTGGGGTGATTTGAAAGGGAGCGGCTTGGGGCCAGATTTGGATTCGTACACGCTATTCATACACGAACTGTGTGAGAAGGAGAA ATGGCGAGAGGCTTGTGGTTTCTTCGTGGAGATGATCGAGAAGGGGTTGCTTCCGCAGAAGGTCACTTTCGAGACCCTTTACAAAGGGTTGATACAATCT GATATGTTGAGAACTTGGCGAAGGTTGAAGAAGAAGCTCGACCAGGAATCGATAACTTTCGGTTCCGAGTTTCAGAGTTATCACTTGAAGCCGTATAGGA GATAA
AA sequence Show only first row Show all	>Lus10039021 pacid=23150581 polypeptide=Lus10039021 locus=Lus10039021.g ID=Lus10039021.BGIv1.0 annot-version=v1.0 MAIELLRHTATVTRHKRIILLHLRRSSSSSSSAAAAAAELPTLQPSGDADLLSQMLLHHHNPFHAMESCLQLHGISLTPSLLHQTLLRLRHSSKIALSLF HYSLSLPSASTDVTTASYNLIIDILAKVRQFDVCWQLIIQMGQQDNNNEDEDCNFHCRPNFLTFSILIRRLIAAGFTRQAIRAFDDMQAFLPQGTAVDET HFCFLLDTLCKYGYVKVAVEIFNKRKFSFNPNVRMYTVLIYGWCKLGRFDMAERFLREMDERGIEPNVVTYNVWLNGICRRARLQPEFKFEKTIVLAEKV FDEMRQRGIEPDVTSFSIVLHVYSRAHKPELTMDKLKLMKEKGISPTVATYTSVIKCLTSSGRIDDAEKLLDEMVVNEVSPSAVTYNCFLKEYRGRNDVE GALKLYRKMRDQCMPSLQTYNILLGMFVKLNRMDIVNEIWGDLKGSGLGPDLDSYTLFIHELCEKEKWREACGFFVEMIEKGLLPQKVTFETLYKGLIQS DMLRTWRRLKKKLDQESITFGSEFQSYHLKPYRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	0	1
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	3.5	0.7988
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	4.7	0.8014
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030628 [exp]	5.9	0.7655
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	8.7	0.7310
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	9.4	0.7692
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	11.0	0.7635
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	13.0	0.7589
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	13.0	0.7617
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	13.9	0.7792
AT3G18050			unknown protein		Lus10027253 [exp]	21.0	0.7455

Compare expression of checked genes

Lus10039021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.