Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21840 343 / 1e-120 UREF urease accessory protein F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027319 [exp] 449 / 2e-162 AT1G21840 330 / 2e-115 urease accessory protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G224400 [exp] 355 / 3e-125 AT1G21840 359 / 4e-127 urease accessory protein F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01730 [flax] [poplar] UreF UreF
Representative CDS sequence Show only first row Show all	>Lus10039022 pacid=23150670 polypeptide=Lus10039022 locus=Lus10039022.g ID=Lus10039022.BGIv1.0 annot-version=v1.0 ATGGAGATGGAAAACGAATCAGCAAAGGGAGGTTCAAATCTGGACTGGAGCAAGTGGCAGCTGCTCGATTCAATTCTCCCCACAGGCGGATTCGCTCATT CATTCGGATTAGAGGCAGCCATTCAAGCTCGTATAGTCTCAGATCCTAACCAACTCCAAACACATCTAATCCACGTCCTGGAGAACACCGGAAGTTTACT TCTCCCTTTCGTCAACTCCGCCACCACAAACCCCACCTCAGAGAATTTCAAAAATCTCGACAGATTACTAGACGCGACTCTAGCCAACGACGCCAGCAGG AAAGCATCCATCGCGCAAGGTTCGGCACTGATGCGGGTGGCTGCAGCGGTCTTCACTGAGATCCCCGATTTTAAAGCGATTAGAGACGCCTACATCGGCA CTCAGATTGTTCAGTTTCACCACGCTCCTGTGTTTGGGTTGGTATGTGGGCTTCTAGGGATGGATGCTGAGGTTGCTCAGAGGGGTTACTTGTTCGTTAC GATGAGGGATGTTATTTCGGCTGCGACGAGGCTGAATTTGGTCGGACCTCTTGGTGCGGCCGTGCTGCAGCATCGGGTCTCGGCCGTTGCTGAGACTGTG CTGCAGAAATGGGGGGATCGTCAAGTGGAGGAAGCGTGCCAGACGGCTCCTTTGCTTGATACTTTGCAAGGGTGCCATAGCTATTTGTTCTCTAGACTGT TCTGCTCATGA
AA sequence Show only first row Show all	>Lus10039022 pacid=23150670 polypeptide=Lus10039022 locus=Lus10039022.g ID=Lus10039022.BGIv1.0 annot-version=v1.0 MEMENESAKGGSNLDWSKWQLLDSILPTGGFAHSFGLEAAIQARIVSDPNQLQTHLIHVLENTGSLLLPFVNSATTNPTSENFKNLDRLLDATLANDASR KASIAQGSALMRVAAAVFTEIPDFKAIRDAYIGTQIVQFHHAPVFGLVCGLLGMDAEVAQRGYLFVTMRDVISAATRLNLVGPLGAAVLQHRVSAVAETV LQKWGDRQVEEACQTAPLLDTLQGCHSYLFSRLFCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	0	1
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	1.4	0.8942
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	3.2	0.8280
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	3.9	0.8034
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	8.5	0.7633
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	12.7	0.7659
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	15.3	0.7674
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	17.4	0.7817
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	23.5	0.7602
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	24.0	0.7651
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	28.9	0.7158

Compare expression of checked genes

Lus10039022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.