Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47560 309 / 3e-103 ATTDT, ATSDAT tonoplast dicarboxylate transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027321 [exp] 363 / 3e-127 AT5G47560 553 / 0.0 tonoplast dicarboxylate transporter (.1) Lus10027320 [exp] 61 / 1e-11 AT5G47550 59 / 4e-12 Cystatin/monellin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013900 [exp] 314 / 2e-105 AT5G47560 759 / 0.0 tonoplast dicarboxylate transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF00939 [flax] [poplar] Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10039023 pacid=23150304 polypeptide=Lus10039023 locus=Lus10039023.g ID=Lus10039023.BGIv1.0 annot-version=v1.0 ATGACAAGAAGTATAACAGACGATATTCCTGGGTGGGGAGTCCTGTTCAATGACCGTGCTGGTGACGGAACCGTTAGTGTTCTGATGGCAACACTACTTT TTATAATCCCGAGCAACAAGAACAAAGGGGAGAAGCTAATGGACTGGGCCAAATGCAAGAAGCTACCGTGGAACATAGTCCTCCTACTCGGGGCCGGGTT CGCTATCGCGGATGGGGTCCGTAAAAGTGGGCTAGCGGACATCCTGACCGAGTCCCTCGAGTTCCTTGAACAGGCCCCGTACTGGGCCATTGCACCTATC GTGTGCCTGATCGGAGCCTTCATAACGGAGTTCACTTCCAACAATGCCACAACAACGTTGCTGATTCCTCTCTTAATCCAAATTGCGAAGACAATGCACG TCCATCCTCTTCTTTTCATGGTCCCGGGCGCCATTGGAGCTCAATTCGCGTTCCTACTCCCCACGGGGACGCCTTCCAACATCGTTGGGTTTACGACCGG GCATATCGAGATCAAGGACATGATCAAAGTCGGGATCCCTCTTAAGATTACTGGCGTAGTTGCTCTGTCCATTTTGATGCCTACTCTTGCTAGTGTAAGC GTGTATTTCATCCCTGCAACTGCCGCTTGGTATTCACCTTTATCCACGCTTACAAGTTCCAATTCCCATCTAGGAGGCTGGCCGTAA
AA sequence Show only first row Show all	>Lus10039023 pacid=23150304 polypeptide=Lus10039023 locus=Lus10039023.g ID=Lus10039023.BGIv1.0 annot-version=v1.0 MTRSITDDIPGWGVLFNDRAGDGTVSVLMATLLFIIPSNKNKGEKLMDWAKCKKLPWNIVLLLGAGFAIADGVRKSGLADILTESLEFLEQAPYWAIAPI VCLIGAFITEFTSNNATTTLLIPLLIQIAKTMHVHPLLFMVPGAIGAQFAFLLPTGTPSNIVGFTTGHIEIKDMIKVGIPLKITGVVALSILMPTLASVS VYFIPATAAWYSPLSTLTSSNSHLGGWP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10039023 [exp]	0	1
AT3G13062			Polyketide cyclase/dehydrase a...		Lus10034791 [exp]	1.0	0.9009
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	27.5	0.8828
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	29.1	0.8864
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	32.6	0.8585
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	35.6	0.8707
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	36.9	0.8708
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	38.1	0.7997
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	38.7	0.8556
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	46.7	0.8451
AT1G71090			Auxin efflux carrier family pr...		Lus10036001 [exp]	47.6	0.8573

Compare expression of checked genes

Lus10039023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.