Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 331 / 2e-110 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 232 / 3e-72 F-box associated ubiquitination effector family protein (.1) AT3G06240 140 / 4e-37 F-box family protein (.1) AT3G07870 91 / 7e-20 F-box and associated interaction domains-containing protein (.1) AT3G23880 87 / 2e-18 F-box and associated interaction domains-containing protein (.1) AT4G19940 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) AT3G08750 72 / 9e-14 F-box and associated interaction domains-containing protein (.1) AT3G10430 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT5G50220 70 / 7e-13 F-box family protein (.1) AT3G21410 68 / 3e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027322 [exp] 315 / 2e-107 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 127 / 2e-32 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10032458 [exp] 116 / 6e-29 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 115 / 2e-28 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 115 / 3e-28 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 113 / 2e-27 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10017605 [exp] 106 / 6e-26 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 103 / 9e-24 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 103 / 9e-24 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012500 [exp] 449 / 1e-156 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 449 / 1e-156 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 434 / 3e-151 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 266 / 3e-85 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 239 / 1e-74 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 176 / 1e-50 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G012900 [exp] 150 / 1e-41 AT4G12560 144 / 2e-39 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 151 / 3e-41 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 150 / 5e-41 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.010G154500 [exp] 148 / 5e-40 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10039024 pacid=23150451 polypeptide=Lus10039024 locus=Lus10039024.g ID=Lus10039024.BGIv1.0 annot-version=v1.0 ATGTCAGAGCCTCCATTTCAAACCGCCGTCCGCCTCCGTCCCAATCGAGTCCCCTACGACATCGTCTCCGACATCTTCCGCCAGCTCCCCGCCAAATCCC TCCTCCGCTTCCGCTCCCTCTCCAAGCCTATCTCCGAGCTCATCGACAGCTACGATTTCATCCGCCGTCATCTCGCCAACTCCCTCCACACCAAATCCAA CCACTCCCTCATCCTTCGCGATTGGAAACTCCACACCGTCGATCTCGATTCCCCCGACGAGGCCCGGGATCTTACTCACCCACTCTACTCCGGCGGGGGT ACCGAGGCTGGCGGCTCCGTAAATGGTCCCGAGGCTGTCGGCTCCGTAAATGGACTGGTCGCTCTCCGTAACTCCGAGCGGGATCTCGCGATCTATAATA TCGCTACTAGGCAGGGAAGGAAGCTTCCTGTTACTGAGGTTGAACCCCCTGGCGGCCAGTATTTGAAGACTGGGTATGTGTTTTACGGTTTTGGTTTTGA TTCTGTTCACGATGATTATAAACTGGTGAGGATGGCTACTTTTGTCGGGGATGAGGATGCTTGTGATACTTATAACTACAATTACGAAGTTAAAGTGTAT AGCTACAGGAGTAATTCGTGGAAGACGATCAAGGACGTTCCTTTCTATCTACGGTTTCTGCATAAGCCTCTCTATCAGGTGTTGCATCGAAGAGGCTACG GAGTTCTCGTTGGTTCTGCTTTGCACTGGATGGTGCCTCAACGGCCTACATTGGGTTTGAAGGATTACATCGTCTCCTTTAACTTCGTCTCTGAGCAGTT CGTGGAAATCTCTCAGCCAAAATACGAGAACAGGGATATGAGCTATGAGGTTGACGTGGGTGCTCTGGAAGGCAAGCTGTGTGCTATGTGTAACTACGAT CATGTTTGCGTTGATCTGTGGGTGATGGAGGAATATGGAGTCAAGGAATCTTGGACTAGGCTTTTTTCAGTTCAGAGAATTAGGAGTACTACTGCATTTG CCTTCTTGAGACCTTTGATTTATTCCAAAGATGGTAATGAATTGCTCCTGGAAGTAAACGATGAGAGGCTTGTATGGTACGACTGGAAGAATGGGAAGGC TAGATCGGTGAAGATTCGTGGTGGGCCAAAGTCATTTGGTGCAGTGATATATGTTGAAAGCCTCATTCCAATTGATGATCCTGACGAAGTTGAGCGGCAA CGACAACGAAGGGAGGATGCAGCCATAGAGAAGTTGAGAGCTGAAACTAACAAATGGTAA
AA sequence Show only first row Show all	>Lus10039024 pacid=23150451 polypeptide=Lus10039024 locus=Lus10039024.g ID=Lus10039024.BGIv1.0 annot-version=v1.0 MSEPPFQTAVRLRPNRVPYDIVSDIFRQLPAKSLLRFRSLSKPISELIDSYDFIRRHLANSLHTKSNHSLILRDWKLHTVDLDSPDEARDLTHPLYSGGG TEAGGSVNGPEAVGSVNGLVALRNSERDLAIYNIATRQGRKLPVTEVEPPGGQYLKTGYVFYGFGFDSVHDDYKLVRMATFVGDEDACDTYNYNYEVKVY SYRSNSWKTIKDVPFYLRFLHKPLYQVLHRRGYGVLVGSALHWMVPQRPTLGLKDYIVSFNFVSEQFVEISQPKYENRDMSYEVDVGALEGKLCAMCNYD HVCVDLWVMEEYGVKESWTRLFSVQRIRSTTAFAFLRPLIYSKDGNELLLEVNDERLVWYDWKNGKARSVKIRGGPKSFGAVIYVESLIPIDDPDEVERQ RQRREDAAIEKLRAETNKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	7.6	0.7011
AT5G53590			SAUR-like auxin-responsive pro...		Lus10006820 [exp]	8.2	0.6564
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	11.2	0.6480
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	12.6	0.7046
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	15.4	0.6350
AT5G40960			Protein of unknown function (D...		Lus10012541 [exp]	15.5	0.6295
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	18.1	0.6713
					Lus10036643 [exp]	24.5	0.6239
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	25.1	0.6715
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	25.5	0.6667

Compare expression of checked genes

Lus10039024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.