Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 96 / 2e-23 UPL5 ubiquitin protein ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027324 [exp] 138 / 1e-39 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1) Lus10010493 [exp] 130 / 1e-35 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10003792 [exp] 90 / 5e-22 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10002605 [exp] 51 / 7e-08 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032830 [exp] 51 / 8e-08 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10008636 [exp] 41 / 0.0002 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011701 [exp] 134 / 4e-37 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 132 / 2e-36 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 82 / 9e-19 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 45 / 9e-06 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10039026 pacid=23150594 polypeptide=Lus10039026 locus=Lus10039026.g ID=Lus10039026.BGIv1.0 annot-version=v1.0 ATGGATGCTGAGTATATTGATTCTGATGCTTTAGCGCTGACGTTTGTTAGGGACGTTGAGCAGTACTTGCGACCCAGGAAGTTTATAGAACTCTTCCCAG GCGGGGAAAACATCGCAGTGAATAGCAAGAACAGAAAAGTTTATATAAACCTTGTGATTCGACATCGATTCGTCACGTCTATCTCTGAACAGATAGTGGA GAAAATGACAGCAGAGCAAAGGAAGACGCTGCTCTTCTTCTGGACATTGGTGAAATATCTGCTGTACGAGGGTTTCAGAGGTTTAGGTAGTGAGCTGTGG ATATGCGGGACTCAGGAACGACATGATCGGTTGCCTTCATCTCACACATGCTTCTACGAGCTGCTTGTTCCGGCTTATCCATCTATGGACGATCGATTCC GCCTGATAACCCAAGACTACATCGGATTGAGCTATGGCAGTCCCTGA
AA sequence Show only first row Show all	>Lus10039026 pacid=23150594 polypeptide=Lus10039026 locus=Lus10039026.g ID=Lus10039026.BGIv1.0 annot-version=v1.0 MDAEYIDSDALALTFVRDVEQYLRPRKFIELFPGGENIAVNSKNRKVYINLVIRHRFVTSISEQIVEKMTAEQRKTLLFFWTLVKYLLYEGFRGLGSELW ICGTQERHDRLPSSHTCFYELLVPAYPSMDDRFRLITQDYIGLSYGSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	0	1
					Lus10021782 [exp]	2.4	1.0000
					Lus10023587 [exp]	3.7	1.0000
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	4.6	1.0000
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	5.7	1.0000
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	5.9	1.0000
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	6.9	1.0000
					Lus10007927 [exp]	7.0	1.0000
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	8.1	0.9977
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	8.5	1.0000
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	8.5	1.0000

Compare expression of checked genes

Lus10039026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.