Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06340 91 / 7e-24 Plant Tudor-like protein (.1) AT3G06520 70 / 1e-14 agenet domain-containing protein (.1) AT1G09320 68 / 6e-14 agenet domain-containing protein (.1) AT1G26540 66 / 3e-13 Agenet domain-containing protein (.1) AT1G11420 59 / 9e-11 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT2G47230 57 / 3e-10 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G03300 46 / 3e-06 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT2G25590 41 / 0.0001 Plant Tudor-like protein (.1) AT4G32440 40 / 0.0004 Plant Tudor-like RNA-binding protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027325 [exp] 250 / 1e-86 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10009266 [exp] 202 / 5e-67 AT1G06340 86 / 2e-21 Plant Tudor-like protein (.1) Lus10037805 [exp] 77 / 4e-17 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10002437 [exp] 77 / 5e-17 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000353 [exp] 76 / 1e-16 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 76 / 2e-16 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017088 [exp] 74 / 7e-16 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10031429 [exp] 71 / 6e-15 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010903 [exp] 69 / 4e-14 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151200 [exp] 126 / 7e-38 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.005G011100 [exp] 86 / 1e-20 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.009G155250 [exp] 81 / 1e-20 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.013G006900 [exp] 81 / 9e-19 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.002G192300 [exp] 71 / 1e-14 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 62 / 9e-12 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.009G072600 [exp] 50 / 2e-07 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.001G157300 [exp] 47 / 1e-06 AT4G17330 726 / 0.0 G2484-1 protein (.1) Potri.006G017400 [exp] 46 / 3e-06 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.003G077600 [exp] 45 / 7e-06 AT4G17330 773 / 0.0 G2484-1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10039027 pacid=23150726 polypeptide=Lus10039027 locus=Lus10039027.g ID=Lus10039027.BGIv1.0 annot-version=v1.0 ATGAAGAAGGAAGCTCGGTTTCGGCGAGGGGACCGCGTGGAAGTGTTGAATGACAAAGACGGGTTCCAGGGGTCCCACTGGGAGGCGGTGGTGATCGAAC GTTTGGGTTCGAATCGGTACAAGGTGGAGTACACGAACCTGATCATAGAAGAGGGGTCGACGGAACTGCTGACAGATACGGTAAGAGGGGAGATGATGCG GCCTTATCCCCTGAGAATTTGGTTTGGGAAAGGTTTCAGGGTGAGGGAGGTTGTCAATGTGTGGGATAAGGATGGTTGGTGGGTCGGGAGAGTGACGGGG AGAGCACAAGGAGGGTTGATGTATTATGTTTACTTCGATGCGCCGTACGAGCAAGAGATTGTTTATCCGGTTTCGATGATCAGACCTCATATCGATTGGG TCGACGGGACCTGGATTCAGCACTCCGTTATTAAAAGCAAGAACAAGCTAATTGGTTAA
AA sequence Show only first row Show all	>Lus10039027 pacid=23150726 polypeptide=Lus10039027 locus=Lus10039027.g ID=Lus10039027.BGIv1.0 annot-version=v1.0 MKKEARFRRGDRVEVLNDKDGFQGSHWEAVVIERLGSNRYKVEYTNLIIEEGSTELLTDTVRGEMMRPYPLRIWFGKGFRVREVVNVWDKDGWWVGRVTG RAQGGLMYYVYFDAPYEQEIVYPVSMIRPHIDWVDGTWIQHSVIKSKNKLIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	1.4	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	2.0	1.0000
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	2.4	1.0000
AT5G28823			unknown protein		Lus10040056 [exp]	2.4	0.8646
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	2.8	1.0000
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	3.2	0.9188
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	3.7	0.8332
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10024331 [exp]	4.9	0.8273
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	5.1	0.7493
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	5.2	0.8222

Compare expression of checked genes

Lus10039027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.