Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73080 1002 / 0 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G17750 927 / 0 AtPEPR2 PEP1 receptor 2 (.1) AT5G63930 584 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 568 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 526 / 9e-167 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G73066 498 / 8e-164 Leucine-rich repeat family protein (.1) AT3G24240 513 / 9e-163 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 504 / 6e-161 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 501 / 3e-158 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 489 / 2e-155 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008849 [exp] 560 / 1e-180 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10036251 [exp] 496 / 2e-155 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10028612 [exp] 492 / 4e-155 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011756 [exp] 492 / 8e-155 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10003612 [exp] 492 / 1e-154 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10017267 [exp] 478 / 3e-151 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10032954 [exp] 481 / 4e-151 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 471 / 4e-148 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 468 / 7e-147 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009300 [exp] 1229 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.008G007600 [exp] 1000 / 0 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.012G022800 [exp] 572 / 0 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1) Potri.011G139700 [exp] 556 / 1e-179 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 554 / 7e-179 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 553 / 3e-178 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G088100 [exp] 519 / 2e-165 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G175700 [exp] 516 / 2e-163 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 516 / 7e-163 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.013G051300 [exp] 509 / 7e-162 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039030 pacid=23150597 polypeptide=Lus10039030 locus=Lus10039030.g ID=Lus10039030.BGIv1.0 annot-version=v1.0 ATGAATCTTCCTCCCGCTTCTTCCTTCTTCTTCCTCCTCCTGCTCTGTTCTTGCTGCCTTCCTTCTCTTAACATCGTTTCCGGGTTCACTAGCTATGATG GGTTGGCTCTTCTATCCTTGTCAGGACGCTGGACCTCCGCCTCTCCTCTAACTTGGAACAACAACAACGCTTCAGACCCGACTCCTTGCTCATGGGTCGG CGTCCAATGCGACAACATTACCTTCCGTGTGGTTTCACTGAACCTCTCCGGTTACGGAATTTCTGGACCGTTGGGTCCTCAAATTGGTGGGTTATCTCAT TTGAAGTCGCTCGATTTGAGCTCCAACAATTTATCCGGCGGAATCCCTTCCCTTCTCGGTAGCAACTGCAGACACCTCGAGCTTTTGGATTTATCCAACA ATGGGTTCACCGGCGCCGTTCCTGGAAGCTTCCAGGAGCTGAAACGGCTACAGTTCTTGAGCTTGTACTCCAACTCGCTGGTTGGTGAAATCCCTGACTC TTTGTTTCGGAATTTGCCTCTTCTGCAATATGCTTATTTGCATGAGAACAGTTTCAATGGTTCCATTCCTGGGAGTGTTGGTGAGTTGAATGAGATTGTG GAGCTGTGGTTGTATGGGAATGAATTCTCTGGTTCGATTCCTGATTCTATTGGGAAATGTAGCAAATTGCAGGCTCTCTACTTGAATGATAACCAGCTGG TTGGTGTTTTGCCCAGGAGTTTGACTGATCTTGGAGAGCTTGTCTATTTCTACGCTGGTCATAATAGTTTGGAAGGTATAATTCCTTCAGGTTTTGGAAA TTGCAAGAATTTAAGCATTCTGGATTTGTCTTTCAACTTTTTTAGTGGTGGGATACCACCGGATTTAGGGAACTGCAGTAGTTTGAACACTCTAGCCATC ATCCATAGTAATTTGACTGGAGGAATTCCTTCTTCATTGGGGCTTTTAGACAACTTGTCCTCTCTTGATCTTTCTGAAAACCAGCTGTATGGAAGAATTC CTCCTGAATTAGGGAACTGCAAGTCCTTGACCGGTTTAAGGTTGTACTCCAACAAGCTTGAAGGTGAGATACCTGCTGAAATTGGGCTGTTAACTGAGTT GCAGGACTTGGAATTGTTTAATAACAGTCTCAGTGGTGAAATCCCTATCAGTGTGTGGAAGATTCCAACCCTGGAGTATCTCCTGGTGTATGAAAACCGT CTCACTGGCGAATTACCTGTGGAGATGACTGAGCTGAAGCAACTGAAGAACCTGTCTCTTTTTGAAAATCAGTTCTTCGGTCAAATTCCACAGACTTTGG GGATCAACAGTAGCCTGATGCAGCTGGACTTTACCAACAATCGGTTCACTGGTCAAATTCCCCCGAATCTTTGCTTCGGGAAGCAGCTTAGAGTACTCAA TATGGCTAAGAATCAGCTTCGGGGCAACGTCCCTTCTGATGTAGGGAGTTGCACAACTCTCTGGAGAGTGAGGATAAGTGAGAATCAGCTCTCGGGTACT CTTCCGGAGTTTGCAGAAAACTCGAGCCTTGCATGGTTTGACATGAGCAGAAATAACATCAGTGGACCGCTTCCACAGAGCTTGAGAAATTGTAGTGAGC TTACCTCTCTTAGTATTTCCATGAATAAGCTGACAGGATCCATTCCTCTGGAGTTTGGGAATCTTGTTAAGCTACATATTCTGGATCTGTCATATAACCA GTTGGAAGGTTCTTTGCCATCTGAGCTTTCAAATTGTTTCCAGATGGAGGTGTTTGCTGTTGGGTTCAACTCACTAAGTGGCTCTATTCCATCAAGTCTG AGCAACTGGACAAAGCTGGCAACATTGGTTTTAAGCGAGAACCGGTTCACCGGGGGCATTCCATCTTTCCTCTCAGAGCTTAAAATGCTTACAGACGTGA AAATAGGTGGAAATTCTCTTGGGGGAGAGATTCCTTCGTCCATTGGCTCTTTGCAAAGTCTGCAGTATGCACTGAATCTCAGTAACAATGGATTGACTGG TGTGATTCCTTCATCACTAGGAAAGCTGGGAAACTTACTACAGCTGGATTTATCAAACAATAAGCTAACAGGTTCTTTGGAATCTCTTGATAACATGCTC TCCCTTGTCCTTATCAATGTTTCATACAATCTATTCTCAGGACCAATACCAGATAGTCTCTTGCAGTTGCGAAACTCAGACCCGTCCTCGTTCTTAGGAA ACCCAAGTCTATGCATCGATTGTCGACAGCTAGTCAACTCGACTTGCAGCAGTTTGAAGACTGATATCAAGCCATGTCAAAAAAAGGAAAAAGGCCATAG TATATTGGAAGTTACAGCTATAGCAGTGGCCTCCATCGTTGTTGTTCTCTCGATTCTCGGACTGTTGTGTTTGGTCGTGTTGTGGTGGAGGCCTAAGAGG GATATCGAGATTGCTGCGTTGGAAGGGCCATCCTCACTGCTCAACAAGGTGATGGAAGCTACTGAGGATCTAAATGAGAAACACATAATAGGAAGGGGAG CTCATGGAACTGTTTACAAGGTACCAATGGACACAGGTGAGACCTTTGCTGTGAAGAGAATCTCCTTCGCAGGCAGTAGAGGAGGAGGTGGTAACAGGAG CATGATCAGAGAAGTTGGAACCATCGGGACGATCAGACACCGAAATCTCATCAAGCTGGAGGACTTCTGGTTAAGAAAAGACTACGGCTTGCTCCTATAT AGCTACATGGAGAATGGGAGCCTTCATGATGTCCTTCACGGAAACTCCTCGCAACAACGAACCCTCGAATGGAGTGCGAGGTATAAGATAGCCCTTGGAA CTGCTCATGCATTGGAGTACCTCCACCATGATTGCAACCCGCCGATAATCCACCGCGACATCAAACCGGAAAACATCCTGTTGGACTCCGACATGGAGCC TCACATCTCAGATTTCGGGATCGCTAAGCTCCTCGATCAATCCTCCAACAGTTCGACTCAATCAATGATGCTCGACGGAACCATTGGATACATCGCTCCA GAAAATGCATTTGCAACAAGTAAGAGCAAGGCATCAGACGTGTACAGCTACGGGATCGTGCTACTCGAGCTGATTACAGGGAAGAGACCTGTGGACGGGT CGTTTCCAGAAGGGAGCGACATAGTGAAATGGGTTAGGTCCACTTGGGATGAGGTGCACGACGATGAAGATGTTCTAAAGGCCATAGCTGATCCAAGGCT TGGCAGAGAAGAAGTGTTTCTTGATTCCAGCGTGATGGAGCAAGTTATTAGGGTGCTCATGGTTGGCCTGGGATGTACAGAGAAAGAGCCCGGCACACGA CCCACGATGAAGGATGTTGTGAATGAATTGTTGGGTCCTAACGTTCCCTTAACAAAGCAAGTGCAGGAAACTGGAAGAACTACTGCCTGCTCTGCTGATT TTTCTTGCTGA
AA sequence Show only first row Show all	>Lus10039030 pacid=23150597 polypeptide=Lus10039030 locus=Lus10039030.g ID=Lus10039030.BGIv1.0 annot-version=v1.0 MNLPPASSFFFLLLLCSCCLPSLNIVSGFTSYDGLALLSLSGRWTSASPLTWNNNNASDPTPCSWVGVQCDNITFRVVSLNLSGYGISGPLGPQIGGLSH LKSLDLSSNNLSGGIPSLLGSNCRHLELLDLSNNGFTGAVPGSFQELKRLQFLSLYSNSLVGEIPDSLFRNLPLLQYAYLHENSFNGSIPGSVGELNEIV ELWLYGNEFSGSIPDSIGKCSKLQALYLNDNQLVGVLPRSLTDLGELVYFYAGHNSLEGIIPSGFGNCKNLSILDLSFNFFSGGIPPDLGNCSSLNTLAI IHSNLTGGIPSSLGLLDNLSSLDLSENQLYGRIPPELGNCKSLTGLRLYSNKLEGEIPAEIGLLTELQDLELFNNSLSGEIPISVWKIPTLEYLLVYENR LTGELPVEMTELKQLKNLSLFENQFFGQIPQTLGINSSLMQLDFTNNRFTGQIPPNLCFGKQLRVLNMAKNQLRGNVPSDVGSCTTLWRVRISENQLSGT LPEFAENSSLAWFDMSRNNISGPLPQSLRNCSELTSLSISMNKLTGSIPLEFGNLVKLHILDLSYNQLEGSLPSELSNCFQMEVFAVGFNSLSGSIPSSL SNWTKLATLVLSENRFTGGIPSFLSELKMLTDVKIGGNSLGGEIPSSIGSLQSLQYALNLSNNGLTGVIPSSLGKLGNLLQLDLSNNKLTGSLESLDNML SLVLINVSYNLFSGPIPDSLLQLRNSDPSSFLGNPSLCIDCRQLVNSTCSSLKTDIKPCQKKEKGHSILEVTAIAVASIVVVLSILGLLCLVVLWWRPKR DIEIAALEGPSSLLNKVMEATEDLNEKHIIGRGAHGTVYKVPMDTGETFAVKRISFAGSRGGGGNRSMIREVGTIGTIRHRNLIKLEDFWLRKDYGLLLY SYMENGSLHDVLHGNSSQQRTLEWSARYKIALGTAHALEYLHHDCNPPIIHRDIKPENILLDSDMEPHISDFGIAKLLDQSSNSSTQSMMLDGTIGYIAP ENAFATSKSKASDVYSYGIVLLELITGKRPVDGSFPEGSDIVKWVRSTWDEVHDDEDVLKAIADPRLGREEVFLDSSVMEQVIRVLMVGLGCTEKEPGTR PTMKDVVNELLGPNVPLTKQVQETGRTTACSADFSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10039030 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	11.6	0.7577
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	12.4	0.7623
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	14.1	0.7225
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	22.8	0.6919
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	26.5	0.6821
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	36.3	0.6995
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	42.1	0.6837
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	44.5	0.7061
AT1G68470			Exostosin family protein (.1)		Lus10013701 [exp]	71.4	0.6630
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	73.5	0.6970

Compare expression of checked genes

Lus10039030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.