Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12064 76 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010487 [exp] 107 / 3e-30 AT1G12064 79 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009500 [exp] 94 / 9e-26 AT1G12064 68 / 5e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039031 pacid=23150473 polypeptide=Lus10039031 locus=Lus10039031.g ID=Lus10039031.BGIv1.0 annot-version=v1.0 ATGAAGACGACGGCAGCAGCGCCGGTGCCCTGGCGGTGGTGGACGACGGTAGCGCTACTCATCTTGTTGTTCTTGGCAACTCCTGCATCTCCGACCTGCC ATCCCTCTCCGGCGCCGCCGTGCAGAAATCGACGTCCGACATGCCGGAACCCCCCTGCCACCGGTGGCAGAGGATGTAAGCAGTGCGTGGTGGAGCAGCT GCATTACGGGTGCCCGAAATGCACTCCGATACTCCGGTGCATGGCGCGGTGCTTGTGGGGCGGCGGGGTTCAGTCGAAGTGCAGCCAGCGGTGCGATTGC GGCGGAGGGAAGCCGTCCCTTACGGAGTGCAAGGCTTGCATGGGTAGAGCTGACGATGAAGTAAGCCGTTCTGCTTGGTGTTCGGCTCGGAAAAAACTTG TTCGTGACTCGCTTCGATTTTAA
AA sequence Show only first row Show all	>Lus10039031 pacid=23150473 polypeptide=Lus10039031 locus=Lus10039031.g ID=Lus10039031.BGIv1.0 annot-version=v1.0 MKTTAAAPVPWRWWTTVALLILLFLATPASPTCHPSPAPPCRNRRPTCRNPPATGGRGCKQCVVEQLHYGCPKCTPILRCMARCLWGGGVQSKCSQRCDC GGGKPSLTECKACMGRADDEVSRSAWCSARKKLVRDSLRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12064			unknown protein		Lus10039031 [exp]	0	1
					Lus10033498 [exp]	1.4	0.8883
					Lus10014474 [exp]	2.6	0.8943
					Lus10024757 [exp]	5.2	0.8613
AT2G15220			Plant basic secretory protein ...		Lus10038602 [exp]	9.1	0.7082
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012572 [exp]	13.8	0.7519
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	17.9	0.7901
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	18.4	0.7910
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	20.7	0.8450
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	21.5	0.7728
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	21.6	0.7588

Compare expression of checked genes

Lus10039031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.