Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20680 426 / 6e-147 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 425 / 1e-146 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G01930 347 / 8e-116 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 338 / 2e-112 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 327 / 1e-108 Glycosyl hydrolase superfamily protein (.1) AT3G10900 313 / 3e-103 Glycosyl hydrolase superfamily protein (.1) AT1G02310 300 / 6e-98 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 224 / 2e-69 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027329 [exp] 829 / 0 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 419 / 2e-144 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 416 / 4e-143 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 415 / 1e-142 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 408 / 4e-140 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 362 / 1e-121 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 345 / 2e-115 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 342 / 2e-113 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 338 / 2e-112 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009400 [exp] 603 / 0 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 426 / 7e-147 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 352 / 1e-117 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 347 / 7e-116 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 345 / 2e-115 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 348 / 3e-115 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 343 / 1e-114 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 322 / 2e-106 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 307 / 2e-103 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 216 / 4e-66 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10039032 pacid=23150645 polypeptide=Lus10039032 locus=Lus10039032.g ID=Lus10039032.BGIv1.0 annot-version=v1.0 ATGGACCTCCGGGGATGGAGAGAGAGGAGGCTTTACCCACTCGTTGGCGGCCTCATTCTTCTCTTTCTCCTATACGTCAGCTTCTTCAGCGACGATCTCG CATTTCCTTCGGTAGTGTGGCAGCCTAAGATGGGCTTCGTCGCCACCGACACCATCCACTTCGTCATCGTCGACGGAGACGGAAGCCGGGATCTGGAATC GACGCCTCCCTACTTCTACGTGAATGGGTGGAACTCATATTGGTTGCTGCAGGAAAGCATATGGAGCTCGTCGCGTCCCAGAGTCTCCAAGGTGCTTAAA GCCGGCGCTGAATTGGGATTGACCGTTTGCAGGACTTGGGCTTTCAGCGATGGTGACGGTCCCGACGCTCTTCAGATTGCCCCTGGCGTCTTTAACGAAA GAGTCTTCAAGGGGTTGGACTATGTGATAGTAGAGGCAAGGAGGCATGGGATCAGGCTGATACTGAGTCTAGTGAACAATCTGGATGCCTTTGGTGGAAA AGATCAGTATGTGAAATGGGGGCAACAAGCAGGGATCAATGTCTCTTCATCTGACGATTCCTTCTTTGCCAATCCAGCTATTAGAGACTACTACAAAGCC TACATCAAGAAAATTGTGACGCGGAAGAACTCTTTAAGCAGAGTGAAGTATTCCGATGAACCAGCTATATTTGCTTGGGAGCTCATGAATGAGCCTAGAT GTGCATCGAGGACTTGTGCCCCTGTTCTTCAGGCGTGGATCAGCGAGATGACCTCATACCTAAAAAGCTTGGACAGAAGGCATCTAGTGACCGTTGGTCT TGAGGGATTCTACGGCCTGAAAGCAGCGAACAAGTCAGAAGTAAACCCTGGGGAATGGGCAGCATCTCTCGGATCGGATTTCATAGAGAACTCAGCTGTT CGCGATATTGATTTCGCATCAGTACATTCCTACCCAGATAGCTGGATGCAGAACGCCGACCTAGAAACGAAGGCGAAGTACCTATCGCGATGGGTGGATT CCCACATTAGCGACGGAGACAGCCTGCTGAAGAAACCGGTTCTCTTCACTGAGGTAGGCTCGGTCGAGAAGGAGGGAGGAAATGACAGAGACGTGTTGTT GAAGATTGTTTACGACAAGATTTACGAGTCTGCTAAGAAGAAAGAAGCAGGCGGAGGGGCCTTAATATGGCAGCTGCTGGTCGAAGGAGTGGAGCAATAC AGTGACCAGTTCTCCTTCGTGCCGTGGCATTATCCTACGACGGCTAAGTTGATAAAGGAGCAATCTTGTAGGTTGCTGCATAACGTTACAGGTGAAGCAG AGGGGAAGCCATTGAATCACGACGATGTTTGCTTTGGTCACCACTAG
AA sequence Show only first row Show all	>Lus10039032 pacid=23150645 polypeptide=Lus10039032 locus=Lus10039032.g ID=Lus10039032.BGIv1.0 annot-version=v1.0 MDLRGWRERRLYPLVGGLILLFLLYVSFFSDDLAFPSVVWQPKMGFVATDTIHFVIVDGDGSRDLESTPPYFYVNGWNSYWLLQESIWSSSRPRVSKVLK AGAELGLTVCRTWAFSDGDGPDALQIAPGVFNERVFKGLDYVIVEARRHGIRLILSLVNNLDAFGGKDQYVKWGQQAGINVSSSDDSFFANPAIRDYYKA YIKKIVTRKNSLSRVKYSDEPAIFAWELMNEPRCASRTCAPVLQAWISEMTSYLKSLDRRHLVTVGLEGFYGLKAANKSEVNPGEWAASLGSDFIENSAV RDIDFASVHSYPDSWMQNADLETKAKYLSRWVDSHISDGDSLLKKPVLFTEVGSVEKEGGNDRDVLLKIVYDKIYESAKKKEAGGGALIWQLLVEGVEQY SDQFSFVPWHYPTTAKLIKEQSCRLLHNVTGEAEGKPLNHDDVCFGHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039032 [exp]	0	1
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	7.2	0.7795
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	9.6	0.7387
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	9.8	0.7912
AT1G24560			unknown protein		Lus10038257 [exp]	12.7	0.7831
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	13.7	0.7850
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	26.5	0.7657
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	27.4	0.7718
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	35.9	0.7657
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	41.7	0.7352
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	43.1	0.7620

Compare expression of checked genes

Lus10039032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.