Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06150 373 / 5e-126 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 345 / 2e-115 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT4G37490 314 / 3e-103 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT2G26760 285 / 3e-92 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT1G76310 245 / 2e-76 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 231 / 5e-71 CYCB2;3 Cyclin B2;3 (.1) AT4G35620 228 / 1e-69 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 224 / 3e-68 CYCB2;1 Cyclin B2;1 (.1) AT1G34460 187 / 5e-54 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2) AT1G16330 190 / 9e-54 CYCB3;1 cyclin b3;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027331 [exp] 435 / 7e-152 AT5G06150 262 / 2e-84 cyclin B 1;2, Cyclin family protein (.1) Lus10003800 [exp] 426 / 1e-146 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10010483 [exp] 306 / 1e-100 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1) Lus10036080 [exp] 303 / 5e-99 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 295 / 6e-96 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10012261 [exp] 246 / 7e-76 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 238 / 1e-73 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 228 / 7e-70 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 222 / 9e-68 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033000 [exp] 383 / 5e-130 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 375 / 2e-126 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.001G272000 [exp] 300 / 3e-98 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 298 / 2e-97 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.002G010000 [exp] 233 / 1e-71 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 232 / 2e-71 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 227 / 1e-69 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 219 / 9e-67 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.010G173200 [exp] 199 / 8e-57 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 176 / 2e-48 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039033 pacid=23150538 polypeptide=Lus10039033 locus=Lus10039033.g ID=Lus10039033.BGIv1.0 annot-version=v1.0 ATGGCGTCCACCAGACCCGTCGTTCCGCAGCAAGTCAGAGGTGGGGGGTTGGTAGAGCAGAAGAAAACCATGGCGGCAGGCGGGGGCGGCGCAGAAAAGA AGAGTCGCAGAGCCCTCGGCGACATCGGGAATGTCGCCTCTGCCGTTGTTCCTGAAATCCTAGGAAAGCCTCAGCAACAGATCGCTCGTCCTGTCACTAG GAGTTTCCGCGCACAGCTCTTGGCCAACGCCCAAGCCGCCGCCGCAGCTGACAACCACAAGAAGCAAATCTGTGCGCCGGCCGCCGTGAAGAAGGCGGCG GCTCCTGTACCACCAACTAAGGAAGCGCAGAAGAAACCTACGGCTGTAAGCAAACCGAAGCCTAAGCCGGCGGTGCCGGAGGAAGTAATCGTCATCAGCC CAGATTCCGAAGAAGCTACCAAGACTAACAAGAAGTGCCAAGAACGATCGATGAAGAAGAAGAAGAAACTCCCGACTCTTACTTCCACCCTCACAACAGC AAGCAAGTCAGCTTCAATCAAGTCCAGGCAGGAGGAAATCTTCAACATCGATGCACCAGATGCCAACAACCATCTGGCCGTCACCGAATATGTCGAAGAA CTCTACAATTTCTACAAGCTCGCTGAGAATGAGAGCCGGCCAATCTGCTATATGGAGAAGCAGCCAGAGATGAACAGCAGGATGAGAGCAATCCTCGTCG ACTGGCTAATCGACGTCCACCAGAAATTCGAGCTCTCCTATGAAACGCTCTACCTAACCATCAACATAATCGACCGTTTCCTCTCAGTGAAGAGTGCCGT CCCGAGGAAGGAGCTCCAGCTAGTGGGGATCAGCGCCACACTCATGGCATCCAAATACGAAGAGATCTGGCCACCGGAGGTCAACGAATTGGTTCTGATC TCCGACAGAGCATACAGCAGTCAACAGATTCTCGTCATGGAGAAGACCATCCTAGCCAATCTGGAATGGACTCTGACCGTCCCGACCCAGTACGTCTTCC TGGTCCGATTCGTCAAAGCAGCCACGGGTTCGGGTCCGGCGGATAAGGAGATGGAGCACATGGCGAATTTCCTGACGGAGCTGGGGTTGATGGATTATGA ATGCTCGGTGAAGTTCCGCCCGTCGATGATGGCGGCGGCGGCGGTTTACGCGGCGAGGCTGGCTCTGATGAAGTCGCCGGCGTGGAATGGGGTGATGGAG TTTTATACTGGGTATAAGGAGGCGGAGGTTGTGGAGTGTGGTAGGGCTTTGGCTGGGTTGCAGTTGAAAGTGAAGGAGAGTAAGCTGCAGAGTGTGGTGA GGAAGTATTCCAGCTCGTTGAAGGGCTCCGTTGCTCTGGTTTTTCCGGCCAAGTCTCTGCTATTGGCTTGA
AA sequence Show only first row Show all	>Lus10039033 pacid=23150538 polypeptide=Lus10039033 locus=Lus10039033.g ID=Lus10039033.BGIv1.0 annot-version=v1.0 MASTRPVVPQQVRGGGLVEQKKTMAAGGGGAEKKSRRALGDIGNVASAVVPEILGKPQQQIARPVTRSFRAQLLANAQAAAAADNHKKQICAPAAVKKAA APVPPTKEAQKKPTAVSKPKPKPAVPEEVIVISPDSEEATKTNKKCQERSMKKKKKLPTLTSTLTTASKSASIKSRQEEIFNIDAPDANNHLAVTEYVEE LYNFYKLAENESRPICYMEKQPEMNSRMRAILVDWLIDVHQKFELSYETLYLTINIIDRFLSVKSAVPRKELQLVGISATLMASKYEEIWPPEVNELVLI SDRAYSSQQILVMEKTILANLEWTLTVPTQYVFLVRFVKAATGSGPADKEMEHMANFLTELGLMDYECSVKFRPSMMAAAAVYAARLALMKSPAWNGVME FYTGYKEAEVVECGRALAGLQLKVKESKLQSVVRKYSSSLKGSVALVFPAKSLLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	0	1
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10019316 [exp]	1.0	0.9751
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	2.4	0.9704
AT1G16630			unknown protein		Lus10006845 [exp]	3.2	0.9739
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	5.0	0.9642
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	5.7	0.9677
AT5G42330			unknown protein		Lus10013229 [exp]	6.7	0.9538
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	9.5	0.9600
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	9.5	0.9603
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	10.6	0.9557
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	12.0	0.9375

Compare expression of checked genes

Lus10039033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.