Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027332 [exp] 151 / 3e-41 ND 67 / 2e-11
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039034 pacid=23150552 polypeptide=Lus10039034 locus=Lus10039034.g ID=Lus10039034.BGIv1.0 annot-version=v1.0 ATGGCCAACCAATACATTGTGCAAGCTAGCTTCTTAGTGTACTTGGTTCTCCACTTGGGAGTCTGGCTAGTTCCTTCTCTCGCTTGCCCGGATTGCTCTT ACCCTCCTTATAATCCACCATCGCCCAACAAACCTCCTTACCCACCGAAGCCACCGGTTGAGAAACCTCCTCATGTGCCCAAACCACCCTCCAAGCCTAA GCCACCGGTTGAGAAACCACCCAACAAGCCGAAGCCACCAGTTGAGAAGCCTCCTAAAGTGCCCAAGCCACCCTATAAACCTAAACCACCAGTTGAGAAG CCTCCTCATGTGCCAAAGCCACCGTACAAACCTAAACCACCGGTTGAGAAGCCTCCCCACAAACCCAAAAAGCCACCAGTTGAGAAGCCTCCTCAAATAC CGAAGCCACCCTACAAACCCAACCCACCGATTGAAAAACCTCCAGAAAAACCTAAACCTCTTACAAACCCAAACCACCTGTTGAAAAGCCTCCGTACAAG CCCAAGCCACCGGTTGAGAAACCTCCCCAAGTACCCAAACCACCCTACAAGTCCAAGCCACCGGTTGAGAAGTCACCCCACAAGCCCAAACCACCGGCTG AGAAACCTCCGTACAAGCCTAAACCACCGGTTGAAGAACCTCCCCAAATGCCCAAACCACCGTACAAACCCAAACCACCAGTTGAGAAACCTCCCAACAA ACCAAAGCCACCAGTTGAGAAGCCTCCTCAAATACCGAAGCCACCCTACAAACCCAAACCACCGATTGAAAAACCTCCAGAAAAACCTAAACCTCCGGTT AAAAAGCCTCCCCAAGTGCCCAAGCCACCAGTTGAGAAGCCTCCTCACATGTCCAAGCCACCCTACAAGCCCAATCCACCGATTGAGAAACCTCCCCAAG TGCCCAAACCACCCTACAAACCCAAGCCACCGATCGAAGAGCCTCCTCACGTACCAAAACCACCCTACAAGCCCAAGTCACCGGTTGAAAAGCCTCCTCA CATACCTAAGCCACCCTACAAGCCCGAACCACCCGCGTCATATTACCCACCACCAAATTAAGTCATGGAAAAGCAAGATAGCAACTCCAATGTGGCACCA ACCTCCTTCTCCATGGCTCTACCTAGCTTATGTCCCCTCCCTAAATAAATGCAATTTCTGCAACAAGTTATGGGTCCTTGATAATGAGTTATATCATATG TACTGTGTTGATGTGAAGTGA
AA sequence Show only first row Show all	>Lus10039034 pacid=23150552 polypeptide=Lus10039034 locus=Lus10039034.g ID=Lus10039034.BGIv1.0 annot-version=v1.0 MANQYIVQASFLVYLVLHLGVWLVPSLACPDCSYPPYNPPSPNKPPYPPKPPVEKPPHVPKPPSKPKPPVEKPPNKPKPPVEKPPKVPKPPYKPKPPVEK PPHVPKPPYKPKPPVEKPPHKPKKPPVEKPPQIPKPPYKPNPPIEKPPEKPKPLTNPNHLLKSLRTSPSHRLRNLPKYPNHPTSPSHRLRSHPTSPNHRL RNLRTSLNHRLKNLPKCPNHRTNPNHQLRNLPTNQSHQLRSLLKYRSHPTNPNHRLKNLQKNLNLRLKSLPKCPSHQLRSLLTCPSHPTSPIHRLRNLPK CPNHPTNPSHRSKSLLTYQNHPTSPSHRLKSLLTYLSHPTSPNHPRHITHHQIKSWKSKIATPMWHQPPSPWLYLAYVPSLNKCNFCNKLWVLDNELYHM YCVDVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039034 [exp]	0	1
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	1.0	0.9318
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	4.2	0.8544
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	6.0	0.8927
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	7.3	0.8927
					Lus10019378 [exp]	7.5	0.8192
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	8.1	0.8854
					Lus10005297 [exp]	8.5	0.8927
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017625 [exp]	8.9	0.8605
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10023853 [exp]	9.3	0.7896
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	9.5	0.8927

Compare expression of checked genes

Lus10039034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.