Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20650 484 / 5e-172 mRNA capping enzyme family protein (.1.2) AT3G52210 69 / 3e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003803 [exp] 570 / 0 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10010478 [exp] 555 / 0 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10027333 [exp] 552 / 0 AT3G20650 482 / 4e-169 mRNA capping enzyme family protein (.1.2) Lus10038644 [exp] 66 / 9e-12 AT3G52210 477 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037917 [exp] 64 / 5e-11 AT3G52210 474 / 2e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130100 [exp] 530 / 0 AT3G20650 582 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.010G233100 [exp] 73 / 6e-14 AT3G52210 489 / 2e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03291 [flax] [poplar] Pox_MCEL mRNA capping enzyme
Representative CDS sequence Show only first row Show all	>Lus10039035 pacid=23150413 polypeptide=Lus10039035 locus=Lus10039035.g ID=Lus10039035.BGIv1.0 annot-version=v1.0 ATGAAACGTGGATACACAGACTCTCCTTCCAACTCTGCTGCTCCTCCTAAATCCAGATTGAAATACACTCCCCAAGGTGATGCCCACTTCTCTGAGGATT TTGTTCAGAAAGTGGCGGACCACTACAGTGCAAGGACGAACCAGACTCTTGAAGAGCGAGAAGCGAGTCCAATTATCCATTTAAAAAAACTCAATAACTG GATTAAGAGTGTCTTAATTCAACTGTATGCACGTAGAGGGGATGCTGTTCTTGATCTTGCTTGTGGCAAGGGTGGTGATCTCATTAAGTGGGATAAAGCC AAAGTGGGATATTATGTTGGTGTTGACATCGCTGAAGGCTCGATAGAAGATTGTCGCACCCGTTACAATGGTGATGCTAATCATCATCAGAATCGTAAAA AGTTCTCATTTCCAGCTCGTCTTATATGTGGAGACTGCTATGAGATTCGTTTGGACAAAGCCCTCGCTGATGACGCTCCTTTTGATGTCTGCAGTTGTCA GTTTGCCCTACATTATTCATGGTCTACTGAGATACGTGCACGGAGAGCCTTGGCCAATATCTCAGCCCTACTACGTCCTGGGGCTGATGGACTTTCGTTT GGCAATAGTGTCTACTGGATTCGTTTTGATGAAGACTATTCCGAAAAGGACGCCGTAGATTGTCCTGAATGGATTGTGCCCTTTAATGTCTTCAAAGCAC TGGCTGAAGAGTATGCTCTAGAGCTAGTGTTTGTGAAGAATGCACATGAATTCGTTCACGAGTATTTAAAGAAACCAGAATACGTTGAGCTAATGCGTAG ACTTGGTGCATTAGGGGATGTCCATGACCAGAGCACCCTAACACCAGATGAATGGGAAGTATCATACTTGTACCTCGCCTTCGTCCTTAGAAAGGTAGGA ACTACCGGTCCCTGTTCAGTTTTTGCTCGATTCTCATTTCCGAGAAACTGTCAGTCAACGATGACTTTGCGAAAGAGATTTATTTCACTAAGATTAAAAC TCTTGGACATTGTGCGTTTCATGATTCATCAGCGAGGCCAACCGGAGCGATCACAAGTAAATAGTAGACGAGATAAAGGAAAGATGCACATACCGAAAGA GGACATCTTGTACCTCAAGTGA
AA sequence Show only first row Show all	>Lus10039035 pacid=23150413 polypeptide=Lus10039035 locus=Lus10039035.g ID=Lus10039035.BGIv1.0 annot-version=v1.0 MKRGYTDSPSNSAAPPKSRLKYTPQGDAHFSEDFVQKVADHYSARTNQTLEEREASPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKA KVGYYVGVDIAEGSIEDCRTRYNGDANHHQNRKKFSFPARLICGDCYEIRLDKALADDAPFDVCSCQFALHYSWSTEIRARRALANISALLRPGADGLSF GNSVYWIRFDEDYSEKDAVDCPEWIVPFNVFKALAEEYALELVFVKNAHEFVHEYLKKPEYVELMRRLGALGDVHDQSTLTPDEWEVSYLYLAFVLRKVG TTGPCSVFARFSFPRNCQSTMTLRKRFISLRLKLLDIVRFMIHQRGQPERSQVNSRRDKGKMHIPKEDILYLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	1.4	0.8253
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	1.7	0.8549
AT2G40480			Plant protein of unknown funct...		Lus10029056 [exp]	12.0	0.7518
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	13.0	0.7450
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	14.8	0.7939
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	15.6	0.7799
					Lus10006886 [exp]	17.3	0.7353
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	17.9	0.7351
AT3G03773			HSP20-like chaperones superfam...		Lus10010669 [exp]	19.0	0.7555
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	19.3	0.7724

Compare expression of checked genes

Lus10039035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.