Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46680 399 / 1e-135 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 206 / 9e-59 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 199 / 6e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 199 / 2e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63080 191 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 192 / 5e-54 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 191 / 5e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 188 / 3e-53 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62720 184 / 9e-53 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 186 / 2e-52 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025564 [exp] 502 / 4e-177 AT5G46680 276 / 2e-88 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027024 [exp] 315 / 1e-106 AT5G46680 153 / 5e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012328 [exp] 199 / 2e-56 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 198 / 5e-56 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 194 / 2e-54 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 188 / 3e-53 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 190 / 5e-53 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 189 / 5e-52 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 182 / 1e-50 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006500 [exp] 466 / 2e-162 AT5G46680 444 / 1e-153 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G013300 [exp] 210 / 2e-60 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 201 / 6e-58 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 200 / 1e-57 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G217600 [exp] 197 / 2e-55 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 193 / 5e-55 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 192 / 1e-54 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 192 / 2e-54 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 191 / 3e-54 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 190 / 1e-53 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039036 pacid=23150257 polypeptide=Lus10039036 locus=Lus10039036.g ID=Lus10039036.BGIv1.0 annot-version=v1.0 ATGTGGGCATTACGCACCTTTCTATTGAATGAATGCGTAAGTTCCTTCTGCAAGACGAAGCAATTGAAACGAGCCGAGACGGTAATTAATGATGGGATTA GACTGGGAGTGCTTCCGGATGTCGTCACTTACAATACGCTCATCGACGCGTACTGTCATCTCGTCAGCTTCGAGGATGCTTATGCTATTCTCGGAAAAAT GGAAGAAGCTGGGATTAGACCGGATGTGATATCTTTCAATACATTGATCGCCGGTGCTACTAGACGCCGCTTGTTCCATTATGCCACTTGCCTGTTCGAC GAAATGCTTCACAGAAACATTTCCCCTGATATTTGTACCTTGAACACTTTGATGCACTCTTTCTTTGAGGAGAGAAAGCCCGAGGAAGCTTATAAGATTT GCACAATTTTTGAATCAATGGGGTTAGAACCTGTCCTTGATACTTATAACATTTGGATCAATGGTCTCTGCAAGAACGGGTTTGCTTCCAGGGCGCTTAG TTTATTTTCGTGTTTGAAGGAACGTGGATTCGATCTGGACGTGGTTACTTATAATACTCTCATTGATGGGTTGTGTAAAGCTGGGAAATTGGGAGCTGCT AGACGGGTTATTCGAGAATTCGAGGCTTCTGGGCACGCTGCCAATGCTATTACTTATACCACGATGATGAATTGTTGGTTTAAGTGTAGGAAATTCAACC AAGGTTTTAGGGTATTGGAAGAGATGAAGAGTAAAGGGTATACTTATGATGGCTTTGGGTATTGCACGGCTCTCGGTGCTCTGCTCAAGGTTGGTAAAGT TGAAGAGGCAGCTGTGTTGAAGGAAGAGATGATAAAGAATGGTATTGAGCTTGATTTAGTGTCATATAATACACTACTGAATCTCTCATGTAAAGAAGGA AAGGTTGAAGATGTTTATAATTTGATTGACCAAATCGAAAAGAGTGGTTTGGAATGTGATAAATACACACATACTATAATTGTGGATGGATTGTGTAAGG CAGGTCAAATTGAGGAAGCTCAACGACACCTGCAGCGTATGGATATGATGGGTTTTGATTCCACCTCAGCTGCTACAAACTCTGTTATTGACATACTATC TAAATCTGGTAATCACGAGCTTGCTATGAAAATGTCTGAATCGATGGAGGTGAGAGATGCCTTTACGTATTCATCCTTGGTTTATAATCTTGCCAAGGCT AGAAGATTCGGCTGTGCATCGGAGCTCTTGCTCTCTTGTGTGAAAGAAGGGATGAAAATACTCCCCGCTGCAAAACGGGCTGTTCTTGATGGTCTCCAAT ATGCTGGCTTTCAAGCAGATGCTAGGAAACTTAGGAACAAAATTAGATACTTTCAGATTATAAAATCGTGA
AA sequence Show only first row Show all	>Lus10039036 pacid=23150257 polypeptide=Lus10039036 locus=Lus10039036.g ID=Lus10039036.BGIv1.0 annot-version=v1.0 MWALRTFLLNECVSSFCKTKQLKRAETVINDGIRLGVLPDVVTYNTLIDAYCHLVSFEDAYAILGKMEEAGIRPDVISFNTLIAGATRRRLFHYATCLFD EMLHRNISPDICTLNTLMHSFFEERKPEEAYKICTIFESMGLEPVLDTYNIWINGLCKNGFASRALSLFSCLKERGFDLDVVTYNTLIDGLCKAGKLGAA RRVIREFEASGHAANAITYTTMMNCWFKCRKFNQGFRVLEEMKSKGYTYDGFGYCTALGALLKVGKVEEAAVLKEEMIKNGIELDLVSYNTLLNLSCKEG KVEDVYNLIDQIEKSGLECDKYTHTIIVDGLCKAGQIEEAQRHLQRMDMMGFDSTSAATNSVIDILSKSGNHELAMKMSESMEVRDAFTYSSLVYNLAKA RRFGCASELLLSCVKEGMKILPAAKRAVLDGLQYAGFQADARKLRNKIRYFQIIKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	0	1
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	1.4	0.9410
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	3.2	0.9048
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	3.5	0.9319
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	5.7	0.9069
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	6.0	0.9002
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	6.6	0.8986
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	7.5	0.9016
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	7.7	0.8900
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	8.5	0.8969
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	9.4	0.8831

Compare expression of checked genes

Lus10039036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.