Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07250 330 / 2e-108 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29730 327 / 3e-107 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT3G21760 325 / 3e-106 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 325 / 3e-106 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21790 322 / 5e-105 UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 318 / 1e-103 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15280 316 / 6e-103 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07240 315 / 2e-102 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT2G29740 314 / 4e-102 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G07260 309 / 4e-100 UGT71C3 UDP-glucosyl transferase 71C3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027334 [exp] 406 / 7e-142 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1) Lus10026795 [exp] 366 / 2e-122 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 358 / 2e-119 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10010476 [exp] 328 / 3e-107 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 327 / 1e-106 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10026793 [exp] 325 / 3e-106 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 323 / 2e-105 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 317 / 1e-102 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039301 [exp] 257 / 7e-80 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015700 [exp] 438 / 2e-150 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G015800 [exp] 427 / 1e-146 AT1G07250 395 / 3e-134 UDP-glucosyl transferase 71C4 (.1) Potri.016G014500 [exp] 405 / 1e-137 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.006G010000 [exp] 397 / 1e-134 AT1G07250 375 / 3e-126 UDP-glucosyl transferase 71C4 (.1) Potri.009G044600 [exp] 378 / 5e-127 AT2G29730 488 / 2e-170 UDP-glucosyl transferase 71D1 (.1) Potri.016G014100 [exp] 373 / 6e-125 AT3G21760 365 / 4e-122 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 373 / 6e-125 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G014350 [exp] 373 / 7e-125 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.014G026301 [exp] 371 / 3e-124 AT1G07250 356 / 2e-118 UDP-glucosyl transferase 71C4 (.1) Potri.016G014401 [exp] 370 / 1e-123 AT3G21760 363 / 3e-121 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10039037 pacid=23150499 polypeptide=Lus10039037 locus=Lus10039037.g ID=Lus10039037.BGIv1.0 annot-version=v1.0 ATGACGCAAACGCAACTAGCTTTCCTTCCTGCTCCGGCAGTCGGCCACCTCGTCTCCATAATCGAGTTCGCCCGCCACTTGCTCTGTCGCGACCCCAATT TCTCCGTCCTCGTCCTCGTAATCAAACTCCCCCCACCGTTCGGCGACGATATTGACAACTACATCCAATCAATTTCCTCCACAAACGATGGCGCCGACAC CCGAATCAAATTCCTTACCCTCTCCCGTCTATCCCCGCCTCCTTCTCCTTCAGCTCCCGGTCTTCCCCAATCCCCGGAGGCTGTCATATCCGCCGTAATC GAGGCCCACAAACCTCTCGTCAAGGAAGCAATCATTCTCAATGGTCACGTGGCCGGCCTGGTAATCGATCTGTTCTGCACTTCAATGATCGACGTCGCTA ACGAGCTCGGAATTCCTTCCTTCCTCTTCTTCACTTCCTCGATCGCGTTTCTAGGTTTCATGCTCTACCTCCCGATCCGCCACGACCGAGTTGGAACCGG CTTTGAATTGGACGATCCAGCCGAGTCGGTACTGGTCCCGAGTTACGCCACCCCGATCCCTCTCCCTCCTCCCTTCCTGCCTCCCGTCCTCCTCGACAAT CGCGGCGGCGGCTACTCCACGATGACGTACCACGGCAGGAGGTTTTGGGAAACCAAAGGCATCATCGTTAATTCGTTCGCCGAGCTCGAGCCTCACGCAG TAAAATCCATAACCTCCCTGCTTCTCCCAGGCGGAGCTCTGCCTCCGCCGCTTTACCCGGTCGGGCCGCTTCTCGATCTCAAGGGTCAGGGGCAAGCGAG ATTCGGCAAGACCGGTCAGCGCGACGAGATCATGAAATGGCTGGATGATCAACCGGAACAATCGGTAATCTTCCTCTGCTTTGGGAGCATGGGAACCTTC GGCGAGATGCAATTGAAGGAAATAGCTACCGGGCTGGAGAAAAGTGGCTACCGGTTCCTCTGGTCTATCCGCAAGCCGCCGTCGAAGGAAACATTATCCC TTCCGGGCAATTATGAAAGCTACGTGGAGATTCTGCCACCAGGTTTCCAGGAGAGGACAGCTGGCACCGGGATGATCTGCGGATGGGCGCCGCAGGCCGA GGTGTTGGAGCATAAGGCGGTGGGAGGGTTTGTGAGTCACTGCGGGTGGAACTCGACGTTGGAGAGTGTGTGGAACGGGGTGCCGATGGTGGCATGGCCG TTGTACGCAGAGCAACAGAGCAATGCAGTGGAGTTGGTGAGGGAGTTGGGGGTGGCGGTTGAGTTGAGGTTGGATTACCGGCTTAATTTTGACGGGGATC ATCAAATTGTTGTGGCGGGGGAGGAGATAGAGCGAGCAGTGAGAAGCGTGATGGAGGAGGAGAGTGCGGTGAGGAAGAAGGTGAAAGAGATGGCTGGAAA GTGCAGGGCGGCCATTGTTGACGGTGGCTCTTCCTTTGCTGCGATTGGGAGCTTTTTATCCGGCGCTATATTAAATAGTTGA
AA sequence Show only first row Show all	>Lus10039037 pacid=23150499 polypeptide=Lus10039037 locus=Lus10039037.g ID=Lus10039037.BGIv1.0 annot-version=v1.0 MTQTQLAFLPAPAVGHLVSIIEFARHLLCRDPNFSVLVLVIKLPPPFGDDIDNYIQSISSTNDGADTRIKFLTLSRLSPPPSPSAPGLPQSPEAVISAVI EAHKPLVKEAIILNGHVAGLVIDLFCTSMIDVANELGIPSFLFFTSSIAFLGFMLYLPIRHDRVGTGFELDDPAESVLVPSYATPIPLPPPFLPPVLLDN RGGGYSTMTYHGRRFWETKGIIVNSFAELEPHAVKSITSLLLPGGALPPPLYPVGPLLDLKGQGQARFGKTGQRDEIMKWLDDQPEQSVIFLCFGSMGTF GEMQLKEIATGLEKSGYRFLWSIRKPPSKETLSLPGNYESYVEILPPGFQERTAGTGMICGWAPQAEVLEHKAVGGFVSHCGWNSTLESVWNGVPMVAWP LYAEQQSNAVELVRELGVAVELRLDYRLNFDGDHQIVVAGEEIERAVRSVMEEESAVRKKVKEMAGKCRAAIVDGGSSFAAIGSFLSGAILNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	0	1
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	2.4	0.8560
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	2.8	0.8741
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	4.5	0.8510
AT1G02070			unknown protein		Lus10009267 [exp]	4.9	0.8612
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	7.1	0.8304
AT1G20180			Protein of unknown function (D...		Lus10005612 [exp]	8.1	0.7829
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	9.5	0.8453
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	9.6	0.8002
AT1G58330		ZW2	transcription factor-related (...		Lus10025265 [exp]	10.5	0.7812
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	11.2	0.8377

Compare expression of checked genes

Lus10039037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.