Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 1286 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 1040 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 793 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 530 / 1e-174 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 256 / 3e-73 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G52290 250 / 3e-73 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G23540 253 / 3e-72 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 252 / 7e-72 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G68690 251 / 1e-71 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT4G02010 250 / 4e-71 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027336 [exp] 1735 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 1250 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 1145 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 1004 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 996 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 767 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 763 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 616 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023220 [exp] 440 / 4e-139 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134900 [exp] 1384 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 1376 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 1129 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 760 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 689 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 555 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 553 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 545 / 2e-179 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 543 / 9e-179 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 528 / 1e-172 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039038 pacid=23150501 polypeptide=Lus10039038 locus=Lus10039038.g ID=Lus10039038.BGIv1.0 annot-version=v1.0 ATGATGAGAAAGAAGAGGTATCCCTGCAAGCTCTTCCACCTGGTTTTGTTACTATCTGTACTTTCTGTACCGGCAAGCTCCTTAACCCAAGATGCTCCGG CAATGTTTGCTCTCAAGAAGACCCTCAACCCTCCAGCCACACTCGGATGGTCCGACCCGGATCCTTGCAAATGGGACCACGTCGGCTGCTCCGACGTCGA CAACCGGGTCACCCGAATCCAAATCGGTCACCAGCAGCTCAAAGGCACTCTCCCACCAGATCTCCGGAACCTCACCCAGCTCGAAAGACTGGAGCTTCAA TCGAACAGCATTTCGGGTCCTCTGCCCACTCTATCCGGACTCGGGTCGCTCCAGGTCGTGATGCTTAGTGACAACCTCTTTGATTCAATCCCCGCCGACT TCTTCAAAGGTTTAACCTCTTTACAATCCATGGAAATTGATAACAACCCATTTTCAAGCTGGGAAGTTCCGGAAAGTGTAAAGGATGCTTCTTCGCTGCA GAATTTCTCTGCTAATTCGGCCAATATATCCGGGTCAATCCCGGGTTTCTTCTTCAACCCGGATGCTTTTCCTGGTTTGGTTATTCTTCATTTAGCGTTT AATAGCTTGGAGGGTGTTTTGCCTGATGGTGTTGCTTCCGGTGGTTCGCCGATTGAGTCATTGTGGCTTAACGGGCAGAAAGGTCAGGGTAAGTTGACTG GGAGTGTTGACTTGTTGCAGAACATGACCTCTTTGAAAGAAGTTTGGTTACATGATAATGGATTCTCGGGTCCCTTGCCTGATTTTGGAGGGTTGACGAG CTTGGAAAAGTTGAGCTTGAGGGATAATTTGTTTACTGGCCCTGTACCGGATTCATTGACCAAGTTGGAATCGTTAAAGGCGGTGAATTTGACTAATAAC TTGTTACAAGGGCCTGCTCCTGAGTTCAAGAGCTCGGTTGCTGTGGATATGGTGAAGGATTCCAACAGCTTCTGCTTGCCAACACCGGGACAATGCGATT CGAGGGTTAATGTATTGCTTTCGATTGTGAAACCTATGGGATATCCTCAAAGGCTTGCTGAGAAATGGAAGGGGAATGATCCTTGTGCTGATTGGCTTGG GATTTCTTGCAGTGGTGACAACATTACTGTTGTTAATTTCCAGAAGATGGGTCTTGTGGGGACTATATCTCCAGACTTTGCTTTGCTTACTTCGTTGCAA AGATTGGTTCTTGCTGATAATAACTTGACAGGGACAATTCCAAAGGAGCTTGCTTCCTTGCCAATGCTGAAGGAAGTTGACGTTGCAAACAATCACATTT ATGGTAAAGTTCCAAGCTTTAAGAATGGAGTTGATTTGAAAACGGATGGGAACAAAGATATAGGGAAAGATGCTAGTAGTTTGTCTCCGGATGGTTCGTC GCCATCGACCGGTCAAGCAGCATCCGGTGATGGTGGTTCGGGAAGTGATGGAAATGGTGGCAAGAAGAAATCATCTTCCATGGTTGGGGTGATTGTGTTT TCAGTAATTGGTGGTGTGTTCATAATTTTCCTTATTGCAGTGTTGGTCTTTTGTGTGTATCAAAGGAAACAGAAGAGGTTTACTAGAGTTCAAAGCCCCA ACGTGATGGTGGTTCATCCTCGCCATTCCGGTTCGGATAACGAGAGTGTGAAAATTACGGTTGCCGGATCTAGTGTCAATGTTGGAGCACTCAGCGAGAC TCATATGATAGGAACAACGAGCGATCATCAGCATGGCGAGATTCAGATGATTGAAGCGGGGAACATGGTGATTTCCATTCAAGTCTTGAAGAATGTTACA GATAATTTCAGTGAGAAGAACATTTTAGGTGCAGGAGGGTTTGGTGTGGTGTACAAAGGCGAGTTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGG AGTCAGGAGTTATAACTGGGAAGGGAATTGGTGAGTTTAAGTCCGAAATCGCTGTGTTGACCAAAGTCAGGCACCGTCACCTTGTGGCATTGCTTGGTTA CTGCATTGATGGCAATGAGAAGCTTCTTGTTTATGAGTACATGCCGCAAGGAACACTTAGCAGCCATCTCTTCAACTGGGCAGAAGAGGGATTGAGACCC TTGGAGTGGACTAGGAGGTTGACTATAGCGTTGGATGTTGCGAGGGGGGTAGAATACCTTCATGGTTTGGCACATCAAAGCTTCATACATAGAGATTTAA AGCCTTCCAACATTCTTCTTGGAGATGATATGAGAGCAAAGGTGTCGGATTTCGGTCTTGTGCGTCTTGCACCGGAGGGTAAAGGCTCCATTGAGACTAG GATTGCTGGAACTTTTGGATACTTAGCACCAGAATATGCAGTAACTGGACGAGTGACGACCAAAGTTGATGTCTTTAGCTTCGGTGTGATACTAATGGAG TTGATCACCGGCAGAAAGGCTCTAGATGAGTCCCAGCCAGAGGAGAGCATGCATCTAGTAACATGGTTCAAGAGAATGTCCCTCAACAAGGACTCATTCA GAAAGGCCATCGACCCAACTCTCGACCTAACAGAGGAAACCCTCGCGAGCATCAGCACGGTAGCCGAGTTGGCAGGTCACTGCTGCGCAAGAGAGCCATA CCAAAGGCCAGACATGGGCCACGCGGTGAACGTTCTATCCTCTCTAGTGGAACTATGGAAACCGACCGACCAGAACGCAGAGGACATCTACGGGATCGAT CTAGACATGTCGTTGCCACAAGCACTGAAGAAATGGCAAGCTTATGAAGGAAGAAGCAATATGGAGTCGTCGTCTTCTTCGCTGCTACCGAGCTTAGACA ACACTCAGACCAGCATACCCACCAGACCGTACGGGTTCGCTGACTCATTCACGTCGGTCGATGGGAGGTGA
AA sequence Show only first row Show all	>Lus10039038 pacid=23150501 polypeptide=Lus10039038 locus=Lus10039038.g ID=Lus10039038.BGIv1.0 annot-version=v1.0 MMRKKRYPCKLFHLVLLLSVLSVPASSLTQDAPAMFALKKTLNPPATLGWSDPDPCKWDHVGCSDVDNRVTRIQIGHQQLKGTLPPDLRNLTQLERLELQ SNSISGPLPTLSGLGSLQVVMLSDNLFDSIPADFFKGLTSLQSMEIDNNPFSSWEVPESVKDASSLQNFSANSANISGSIPGFFFNPDAFPGLVILHLAF NSLEGVLPDGVASGGSPIESLWLNGQKGQGKLTGSVDLLQNMTSLKEVWLHDNGFSGPLPDFGGLTSLEKLSLRDNLFTGPVPDSLTKLESLKAVNLTNN LLQGPAPEFKSSVAVDMVKDSNSFCLPTPGQCDSRVNVLLSIVKPMGYPQRLAEKWKGNDPCADWLGISCSGDNITVVNFQKMGLVGTISPDFALLTSLQ RLVLADNNLTGTIPKELASLPMLKEVDVANNHIYGKVPSFKNGVDLKTDGNKDIGKDASSLSPDGSSPSTGQAASGDGGSGSDGNGGKKKSSSMVGVIVF SVIGGVFIIFLIAVLVFCVYQRKQKRFTRVQSPNVMVVHPRHSGSDNESVKITVAGSSVNVGALSETHMIGTTSDHQHGEIQMIEAGNMVISIQVLKNVT DNFSEKNILGAGGFGVVYKGELHDGTKIAVKRMESGVITGKGIGEFKSEIAVLTKVRHRHLVALLGYCIDGNEKLLVYEYMPQGTLSSHLFNWAEEGLRP LEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILME LITGRKALDESQPEESMHLVTWFKRMSLNKDSFRKAIDPTLDLTEETLASISTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPTDQNAEDIYGID LDMSLPQALKKWQAYEGRSNMESSSSSLLPSLDNTQTSIPTRPYGFADSFTSVDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	1.0	0.9262
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	2.4	0.8983
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	3.5	0.8929
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	6.0	0.8840
AT1G35780			unknown protein		Lus10033456 [exp]	6.3	0.8314
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	7.5	0.8688
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	10.6	0.8423
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	10.8	0.8468
AT1G23965			unknown protein		Lus10030844 [exp]	11.5	0.8764
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	12.0	0.8350

Compare expression of checked genes

Lus10039038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.