Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 224 / 2e-72 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 219 / 7e-71 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 80 / 5e-17 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027337 [exp] 298 / 2e-101 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 241 / 4e-79 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 238 / 1e-77 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 227 / 3e-74 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 226 / 9e-74 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 180 / 1e-56 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10027604 [exp] 81 / 2e-17 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 80 / 4e-17 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 72 / 2e-14 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017500 [exp] 232 / 7e-76 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 224 / 1e-72 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 221 / 1e-71 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.001G159400 [exp] 220 / 2e-71 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 82 / 1e-17 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 79 / 5e-17 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 76 / 1e-15 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 75 / 2e-15 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10039039 pacid=23150492 polypeptide=Lus10039039 locus=Lus10039039.g ID=Lus10039039.BGIv1.0 annot-version=v1.0 ATGGGCGGTGCGCAGAACTCGAGCGGAAATCTAGTTGTCTCTTCCCCGGCTCAAAACCCTCCCGATCTATCCTCAATCAACGTCGCCGGCAATTCCGATC AACCGATGCCCTCCGACAAGCCTGTACGTGTCTACGCTGACGGGATCTACGATCTCTTCCACTTCAGCCACGCTCCCTCCCTCGAGCAAGCCAAGAAATC GTTTCCGAATTCGTATCTACTCGTTGGATGTTGCAATGACGAAACTACTCACAAGTACAAGGGGAAAACTGTCATGACCGCAGCTGAGCGCTACGAATCC CTTCGCCACTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCTTGGGTAATCGATCAGGAGTTTCTTGACAAACACAAGATTGATTATGTTGCCTACG ATGCCTTACCATATGCCGATGCGAGTGGAGCTGGGAATGATGTTTATGAGTTTGAAAAGCGACTGAGGGTCAACATGAGATTGAAGAAACTACAAGAGAA AGTGAAAGAGCAACAAGGGAAAGTTGGAGAAAGGGGGACAGCCATTAGAGACAGAATTCAAGAACGATTAAGGAGCCTTGAGGACGACGAGGAAGAATAT TACGACGAAGACTCCGACGATGATTATGAGTACGAGAATGAAGATGACGAGGAAAAACTACTACGACGACGTAGAATCTCCTCAGGCTGTTGGCACTCTG TTGTTGTTTGTAGATTGTAA
AA sequence Show only first row Show all	>Lus10039039 pacid=23150492 polypeptide=Lus10039039 locus=Lus10039039.g ID=Lus10039039.BGIv1.0 annot-version=v1.0 MGGAQNSSGNLVVSSPAQNPPDLSSINVAGNSDQPMPSDKPVRVYADGIYDLFHFSHAPSLEQAKKSFPNSYLLVGCCNDETTHKYKGKTVMTAAERYES LRHCKWVDEVIPDAPWVIDQEFLDKHKIDYVAYDALPYADASGAGNDVYEFEKRLRVNMRLKKLQEKVKEQQGKVGERGTAIRDRIQERLRSLEDDEEEY YDEDSDDDYEYENEDDEEKLLRRRRISSGCWHSVVVCRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10039039 [exp]	0	1
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	9.6	0.7281
AT4G27290			S-locus lectin protein kinase ...		Lus10005052 [exp]	13.1	0.6647
					Lus10028069 [exp]	15.4	0.7925
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	15.9	0.7311
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	19.5	0.7672
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	23.2	0.7585
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	24.4	0.7819
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	32.1	0.7790
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	33.9	0.7551
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	39.8	0.7143

Compare expression of checked genes

Lus10039039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.