Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15110 880 / 0 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT1G31800 432 / 5e-145 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT3G53130 415 / 2e-139 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT3G14680 149 / 1e-38 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G26710 144 / 5e-37 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT5G52400 140 / 1e-35 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT5G24900 137 / 1e-34 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT3G14640 136 / 4e-34 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14690 135 / 8e-34 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14620 135 / 9e-34 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020380 [exp] 434 / 3e-145 AT1G31800 905 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Lus10023891 [exp] 398 / 9e-132 AT3G53130 852 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10014399 [exp] 394 / 3e-130 AT3G53130 850 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10008423 [exp] 137 / 2e-34 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10018717 [exp] 136 / 4e-34 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10033044 [exp] 136 / 5e-34 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025756 [exp] 135 / 1e-33 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10036820 [exp] 134 / 2e-33 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10039234 [exp] 133 / 4e-33 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006200 [exp] 932 / 0 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.013G088100 [exp] 427 / 9e-143 AT1G31800 921 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Potri.006G119800 [exp] 396 / 6e-132 AT3G53130 834 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Potri.015G145100 [exp] 150 / 4e-39 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.011G117600 [exp] 148 / 3e-38 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.004G100400 [exp] 147 / 7e-38 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 146 / 1e-37 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.011G101500 [exp] 144 / 4e-37 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G098800 [exp] 144 / 7e-37 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.018G070900 [exp] 142 / 3e-36 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10039040 pacid=23150411 polypeptide=Lus10039040 locus=Lus10039040.g ID=Lus10039040.BGIv1.0 annot-version=v1.0 ATGCCTGTACTCGCTGTTGTACGCCCAGAAAGAAAGAAAAACATCCGACAAACGAGCCATGTCTCTGACCTCAACTACAATTTCTTCTTTCACTCAACCC TCTTTACTGAATTGCAATGGCAACTCGCTGCCCAGAAATCCAATCCGATTCTTAGATGTCAATCCACAAGCACAGAGAAACCCAAAGCAAGGAACTTGAT GGACAATGCGAGCAACTTGCTCACCAATTTCTTAAGTGGGGGGAATTTAGGGTCTATGCCAATTGCTGAAGGGGCAGTAACTGACCTGTTTGATCGTCCA CTGTTCTTCTCTTTGTACGATTGGTTCCTTGAGCATGGTCCTGTGTACAAACTTGCTTTTGGGCCTAAAGCATTTGTCGTTGTGTCTGATCCCATTGTTG CAAGATACATCCTACGTGAAAATGCATTTTCATACGACAAGGGTGTTCTTGCTGATATTCTGGAACCAATAATGGGTAAAGGACTTATACCTGCTGATCT TGACACATGGAAACAAAGGAGACGAGTTATTGCACCTGGGTTTCACACTTCATACCTGGAAGCAATGGTCAAGATATTTACCGACTGCTCAGAAAGGTCA ATAATGAAATTTGATGAACGTCTCGGAGCAGGTGGGGAAGCAATTGAGCTTGATCTAGAAGCCGAGTTTTCAAGCTTAGCTCTTGATATCATTGGCCTCA GTGTCTTCAACTACGACTTTGGCTCTGTTACAAAAGAATCGCCTGTTATTCAGGCTGTCTACGGCACACTTTTTGAAGCTGAGCATAGATCCACTTTTTA TATTCCTTACTGGAAAATTCCTTTGGCAAGGTGGATAGTTCCCAGACAGCGGAAGTTCCACAGCGACCTCAAAACTATAAATGACTGCCTTGATGAACTG ATAAAGAACGCAAAAGAGACTCGGCAGGAAGCAGATGTTGAGAAGCTGCAGCAGAGAGACTACTTAAACCTCAAAGATGCAAGTCTGTTAAGGTTTCTTG TTGACATGCGAGGAGTTGATGTGAATGACCGCCAGCTACGAGATGACCTGATGACTATGCTTATTGCTGGCCATGAAACGACGGCTGCTGTTCTTACTTG GGCTGTTTTCCTTCTTGCACAGAACCCCTCCAAAATGAAGAAAGCTCAAGCAGAGTTGGATGCAGTTCTGGGTTCGGAGAAGCCAACGTTTGAATCTCTT AAGAAACTAGAATATATACGGCTTATTGTCATCGAATCTCTTCGTTTGTACCCTCAGCCACCGTTGCTCATCAGACGCTCGTTGAAACCAGACTTAGCAA TATGGCTTACTTGTCTATCAAAATGTGCAGGAGGATACCGGGGTGCCAAAGAAGGCTACGCGATTCCTGTGGGGACTGATATATTTCTTTCTGTATATAA TGTCCACAGGTCCCCTTATTTCTGGGACCGTCCCAACGAGTTCGAGCCCGAAAGGTTTCTAGTGGCAAAGAAGGACGAATCGATTGAAGGATGGGCTGGG TTTGATCCGTCCAGAAGCCCTGGAGCATTATACCCCAACGAGGTGATATCGGATTTTGCGCTGCTTCCCTTTGGCGGAGGACCAAGGAAATGCGTCGGGG ACCAATTCGCCCTGATGGAATCCACGGTCGGGTTGGCTATGTTGTTGCAGAAGTTCGACGTGGAGCTGAGAGGCAGCCCGGAATCGGTGGAGCTCGTCAC TGGAGCCACCTTGCATACAAAGAATGGAATGTGGTGTAGATTGCGAAAGAGATCATGA
AA sequence Show only first row Show all	>Lus10039040 pacid=23150411 polypeptide=Lus10039040 locus=Lus10039040.g ID=Lus10039040.BGIv1.0 annot-version=v1.0 MPVLAVVRPERKKNIRQTSHVSDLNYNFFFHSTLFTELQWQLAAQKSNPILRCQSTSTEKPKARNLMDNASNLLTNFLSGGNLGSMPIAEGAVTDLFDRP LFFSLYDWFLEHGPVYKLAFGPKAFVVVSDPIVARYILRENAFSYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHTSYLEAMVKIFTDCSERS IMKFDERLGAGGEAIELDLEAEFSSLALDIIGLSVFNYDFGSVTKESPVIQAVYGTLFEAEHRSTFYIPYWKIPLARWIVPRQRKFHSDLKTINDCLDEL IKNAKETRQEADVEKLQQRDYLNLKDASLLRFLVDMRGVDVNDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAELDAVLGSEKPTFESL KKLEYIRLIVIESLRLYPQPPLLIRRSLKPDLAIWLTCLSKCAGGYRGAKEGYAIPVGTDIFLSVYNVHRSPYFWDRPNEFEPERFLVAKKDESIEGWAG FDPSRSPGALYPNEVISDFALLPFGGGPRKCVGDQFALMESTVGLAMLLQKFDVELRGSPESVELVTGATLHTKNGMWCRLRKRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	0	1
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10029841 [exp]	1.7	0.9468
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	2.2	0.9553
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	3.2	0.9497
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	3.5	0.9429
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	4.2	0.9384
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	5.9	0.9412
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	7.0	0.9373
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	7.9	0.9325
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	8.1	0.9168
AT2G32040			Major facilitator superfamily ...		Lus10006106 [exp]	9.3	0.9013

Compare expression of checked genes

Lus10039040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.