Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63010 343 / 1e-117 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027338 [exp] 551 / 0 AT5G63010 432 / 2e-152 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000900 [exp] 413 / 5e-145 AT5G63010 425 / 1e-149 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G087300 [exp] 229 / 2e-74 AT5G63010 276 / 7e-93 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10039042 pacid=23150661 polypeptide=Lus10039042 locus=Lus10039042.g ID=Lus10039042.BGIv1.0 annot-version=v1.0 ATGGAATTGGGAAGTTGCCACCTGGATGGCAATGCTGATGCAGTAGAGTTCTGTCCACACGAGTCCTACCACCATATTCTCGCAGCTGCTACTTACAACT TACAGGAAGGTGACCCCCCTACTAGATCAGGGAGCATTTCTCTCTTCGAAGTCGATCCTCAAAAGGGTCGATTCGAGTTGTTTCACAAGGTAGAAACAAC TGGGATATTCGATATCAAGTGGAATCCGGTTGGTAGTAATGTAGATCCCCTTCTTGGCCAAGCTGATGCTGATGGATTCTTGAGAATTCGCAGCCAGCAG CATTGCTCTTCAGATGGACCAAAAGGATGCTCCCTGAAAGAAGTATCGGCCAAAAAGATCAGCTCTGCAATGTGTCTCTGGCTGGATTGGAATCCATCCT CCAGCTCGATTTCAGTGGGGCTATCCGATGGTTCTGTCTCGGTGGTTTCAATCTCAGAATCCCAACTGGACGTGGTTCAAGAGTGGCAAGCTCATGATTT CGAGATGACTGCAAATTCAGATGCTGGGATATCCGAGATCAACCTTCCAACATGGTTTTCGAGAACTCCAAGGTCCACAAGATGGGGGTTTGCTCAGAAC TCCAAGGTCCACAAGATGGGGGTTTGCTGCATCGCAAAGAGTCCCACCGACCCAAACACATTGCTGACAGGTAGCTACGACGAGTGTCTTCGTCTATGGG ATGTACGATCAATTTCGAAACCCGTGAACCAAGTCTCGGTGTGCTTAGGGGGTGGAGTTTGGAGACTTAAACACCATCCGTTTGTACCGAATGTGATATT AGCAGCTTGTATGCACAATGGTTTCGCTATTGTTAAGATCAACGAAGGGGGAGCTGAAGTTGTTGAAACTTACGATAAACACGAATCGCTAGCTTACGGT GCTGATTGGCAGAGAGGTGGATATTATGAAGACGGCAGTGAAAAGAGAGCTGCAGTAGCAACTTGCTCCTTTTACGACAAGCTTCTTCGAACATGGATTC CTCAAAAGACCATTGCTTAG
AA sequence Show only first row Show all	>Lus10039042 pacid=23150661 polypeptide=Lus10039042 locus=Lus10039042.g ID=Lus10039042.BGIv1.0 annot-version=v1.0 MELGSCHLDGNADAVEFCPHESYHHILAAATYNLQEGDPPTRSGSISLFEVDPQKGRFELFHKVETTGIFDIKWNPVGSNVDPLLGQADADGFLRIRSQQ HCSSDGPKGCSLKEVSAKKISSAMCLWLDWNPSSSSISVGLSDGSVSVVSISESQLDVVQEWQAHDFEMTANSDAGISEINLPTWFSRTPRSTRWGFAQN SKVHKMGVCCIAKSPTDPNTLLTGSYDECLRLWDVRSISKPVNQVSVCLGGGVWRLKHHPFVPNVILAACMHNGFAIVKINEGGAEVVETYDKHESLAYG ADWQRGGYYEDGSEKRAAVATCSFYDKLLRTWIPQKTIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	0	1
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	3.0	0.8927
AT3G11500			Small nuclear ribonucleoprotei...		Lus10021342 [exp]	7.7	0.8877
AT1G20770			unknown protein		Lus10030736 [exp]	8.5	0.8529
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	9.5	0.8876
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10029818 [exp]	11.2	0.8676
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	13.0	0.8740
AT4G14320			Zinc-binding ribosomal protein...		Lus10017396 [exp]	13.3	0.8885
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	14.0	0.8907
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	16.7	0.8708
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	17.2	0.8745

Compare expression of checked genes

Lus10039042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.