Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15080 729 / 0 DHHC-type zinc finger family protein (.1) AT3G22180 665 / 0 DHHC-type zinc finger family protein (.1) AT2G33640 409 / 1e-134 DHHC-type zinc finger family protein (.1) AT1G69420 291 / 6e-89 DHHC-type zinc finger family protein (.1.2) AT4G01730 160 / 5e-42 DHHC-type zinc finger family protein (.1) AT5G04270 69 / 1e-12 DHHC-type zinc finger family protein (.1) AT3G26935 67 / 1e-11 DHHC-type zinc finger family protein (.1) AT3G48760 66 / 7e-11 DHHC-type zinc finger family protein (.1) AT3G09320 62 / 3e-10 DHHC-type zinc finger family protein (.1) AT5G41060 62 / 6e-10 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027339 [exp] 1269 / 0 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016036 [exp] 468 / 9e-157 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 322 / 3e-101 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 303 / 2e-94 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 296 / 5e-92 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 298 / 2e-91 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 231 / 1e-67 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 227 / 6e-66 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 156 / 1e-40 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018400 [exp] 855 / 0 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 823 / 0 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 512 / 1e-173 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 348 / 3e-115 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 301 / 8e-93 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 294 / 9e-90 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.014G112000 [exp] 224 / 4e-65 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 212 / 1e-60 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254432 [exp] 110 / 7e-26 AT2G33640 136 / 2e-35 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 69 / 6e-12 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039043 pacid=23150534 polypeptide=Lus10039043 locus=Lus10039043.g ID=Lus10039043.BGIv1.0 annot-version=v1.0 ATGGTGAGGAAGCACGGATGGCAATTGCCAGCACACACGTTTCAGGTTGTTGCAATCACAGTCTTCTGCCTGCTAGTGATAGCATTCTATGCTTTCTTTG CCCCTTTCCTTGGAGGCCACATTTGGGAATACACTCTAATTGGCGTATACTCTCCAGTGGTCCTCCTAGTTTTTATTCTTTATGTTCGTTGTACTGCAAT TAATCCAGCGGATCCTGGGATTATGTCCAAATTCAATCCTCATATAGCACCGAACACAAATGCTAAGCACAGACGATTTGGTGAAACTGGCAGTGCAATG CATTCTTCCCCGTCTTCAATGTCCAAAAGTTCTATAGCTGCTGCCAACTCTAGCAGACAAGGATCATTTGGAGATACCGGGAGAGCTCCTGCTGAGCCCC CGGCCCAAACATCATGCTCTATTCTTGGGGGGATCTTATGTGCCGTTTTTGTTCATGAAGATTGTCGCAAGCAGGAGGGGATCACTGAGGAACAGGGCTC TGTTGAAGATGCATTATTCTGTACATTGTGCAATGCTGAGGTACGCAAGTTTAGCAAGCACTGCCGTAGTTGTGATAAATGTGTCGATGGTTTCGATCAC CATTGTCGGTGGTTGAACAATTGTGTTGGCCATAAAAATTATGTGACTTTCATTTCCCTTATGGCTAAAAATTTTGTCTGGCTTGTACTCGAAGCTGGAG TCGGAATTGCTGTCTTGGTCCGCTGCTTTGTCAATAAGAAAAGCATGAGTGCTGAAATTGTTGATACGCTTGGAAATGGTTTCTCTCGTGCTCCCTTTGC TACTGTAGTGTCTGTATGTACAGCAGTTTCAATTTTGGCCTGCATTCCCTTGGGCGAGCTCTTTTTCTTTCACATGATATTGATTAGAAAGGGTATTACA ACTTATGAGTACGTTGTGGCAATGAGAGCAATGAGTGAGGGTCCTACATTGAACTTGGATGAGCAATTTAACAACGCAGGAAACTCCCCAACAGGATCGG CAACCACAGGATTCAGCGGTGGAAGTTCTCTTGGCCTACAGTACAAAGGAGCATGGTGTACCCCTCCCAGAATATTCGTCGATTATCAGGATGAAGTAAT ACCTCACTTGGAGCCAGGAATGGTCCCTTCAACCATTGACCCGGATGCAGGTGGAGATAATGGTGAAAGAGCGAACAGGCCGGGGAAAAGGCCAGTTCGA ATCAGTGCTTGGAAACTTGCTAAGTTGGACTCCAATGAAGCAATGAAGGCGGCGGCAAAGGCAAGGGCGTCTTCTTCTGTTTTAAAACCAGTTGAAGGAA GCCAACAGTTCCCCTATCTTGTTGAAGGTAGCTCAAGTGGCAATATGAGTGTCAGAAGTAGTGTTAGTGCTGAAATGGTTCCAAATAAGGGCATCAAGAG TGATCTGCTGCGGTTGCCCTCACAAGATCATTCTGTACCTCCTAGTCTAGGTAGCCATGATGATTGCGAAGCCGGAACTCCAAGTGTTAGTAGCTTCGAC AGTCCAAGCCACATCCATGAATCAGTCACCCTTAGCCCTCTTCCACAAGGTCATAGGCTAGGTCATCCGAAAGCAGCAACCTCGGTTCCTGGTTTTATCC CGGGGGGTCATCCTTTAACATCCAAGACGAGTTATCCCAGTGGCAACAATCCTTTGACACTTTCTACGTCTGGATTTGATGAGAAGATTGCACAGAGGGG GGGCATCACTGCGGATCCTTTGCTTCTTACTGCACCAACATCATCATCTCTTATTAGAGATGTAAAGAGAACTTCTGTGGTTTGGGACCAAGAGGCTGGA AGATACGTCTCAGTTCCTCTATCGTCTACTGATGCTCGAAGTAGACCAGCTCCACAGACCGGATTGTCAAAACCTAGTGCAGAGGTAAGCACTTATGGTA AGAGGCCAGCGAATCCACCACCGGAAGGGTCTTCATCGTCCATGGAAAAACCACCGGCACAGCAAGGGGAGAAACTGATGTACACAGGGGACTCCATCTT TTTCGGCGGTCCACTCTTGAGTGCCCCGCTTCGAGAAGGTTCGAGAAATGAAGGGAGTTCCGGGCTAAGAGATGGCCATCAGAGGTTTGCATTAAATTTG CCTCGAGAATCGAGATTCAGAAGAGACTCTGTCTCGAATCAGCTACCTGTTTTCACCCCTGCGGGATCTGAGCACAAAGGTTAA
AA sequence Show only first row Show all	>Lus10039043 pacid=23150534 polypeptide=Lus10039043 locus=Lus10039043.g ID=Lus10039043.BGIv1.0 annot-version=v1.0 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFFAPFLGGHIWEYTLIGVYSPVVLLVFILYVRCTAINPADPGIMSKFNPHIAPNTNAKHRRFGETGSAM HSSPSSMSKSSIAAANSSRQGSFGDTGRAPAEPPAQTSCSILGGILCAVFVHEDCRKQEGITEEQGSVEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDH HCRWLNNCVGHKNYVTFISLMAKNFVWLVLEAGVGIAVLVRCFVNKKSMSAEIVDTLGNGFSRAPFATVVSVCTAVSILACIPLGELFFFHMILIRKGIT TYEYVVAMRAMSEGPTLNLDEQFNNAGNSPTGSATTGFSGGSSLGLQYKGAWCTPPRIFVDYQDEVIPHLEPGMVPSTIDPDAGGDNGERANRPGKRPVR ISAWKLAKLDSNEAMKAAAKARASSSVLKPVEGSQQFPYLVEGSSSGNMSVRSSVSAEMVPNKGIKSDLLRLPSQDHSVPPSLGSHDDCEAGTPSVSSFD SPSHIHESVTLSPLPQGHRLGHPKAATSVPGFIPGGHPLTSKTSYPSGNNPLTLSTSGFDEKIAQRGGITADPLLLTAPTSSSLIRDVKRTSVVWDQEAG RYVSVPLSSTDARSRPAPQTGLSKPSAEVSTYGKRPANPPPEGSSSSMEKPPAQQGEKLMYTGDSIFFGGPLLSAPLREGSRNEGSSGLRDGHQRFALNL PRESRFRRDSVSNQLPVFTPAGSEHKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15080			DHHC-type zinc finger family p...		Lus10039043 [exp]	0	1
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	7.0	0.9422
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	7.3	0.9420
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	11.5	0.9359
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	14.5	0.9374
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	15.4	0.9360
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10001850 [exp]	19.0	0.9341
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	19.1	0.9359
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	19.7	0.9220
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	19.9	0.9360
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	23.0	0.9314

Compare expression of checked genes

Lus10039043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.