Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24280 1132 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 1120 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G09590 649 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 620 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G28540 528 / 7e-180 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 527 / 2e-179 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 506 / 2e-171 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 506 / 2e-171 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 503 / 4e-170 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 499 / 7e-169 HSP70B heat shock protein 70B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017566 [exp] 1219 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10010496 [exp] 1189 / 0 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10037357 [exp] 1165 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10035781 [exp] 1159 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10027341 [exp] 1116 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10009039 [exp] 659 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 657 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 652 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 621 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006300 [exp] 1172 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 1161 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.009G079700 [exp] 658 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 563 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G087500 [exp] 531 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 530 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 520 / 8e-177 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 514 / 1e-174 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 514 / 2e-174 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 508 / 4e-172 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10039044 pacid=23150560 polypeptide=Lus10039044 locus=Lus10039044.g ID=Lus10039044.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGACTGCCCAGATTCATGTTCTCGGAAGCATGGGGTTTGTTTCATCTGGGTCAAAGAAACCCAGCTTCTCTTTCGCCCCAAAGACCGTTT TCCCGGGTCAAAGTTTGGGCTGTTCTAGAACGGCGGCGGTTTTGAGGTACAACGCGCGGCGGAGAAGCTACAGCAGCGGTCGGTTGAGAGTGGCGTGTGA AAAAGTGGTGGGAATCGATCTTGGTACCACCAATTCTGCTGTTGCTGCCATGGAAGGAGGGAAGCCGACTATTGTGACCAATGCGGAGGGGCAGAGGACT ACACCGTCGGTGGTGGCGTATACGAAGAACGGTGATAGGCTGGTTGGTCAGATTGCCAAGCGGCAAGGGGTGGTGAACCCGGAGAACACTTTCTTCTCGG TGAAGAGGTTCATTGGGAGGAAGATGTTGGAGGTGGATGAAGAGTCCAAGCAGGTTTCTTATAGAGTGGTTAGGGACGACAATGGGAATGTTAAGCTGGA TTGTCCAATTTTGGGTAAACAGTTTGCTGCCGAAGAGATTTCAGCTCAGGTTTTAAGGAAACTCGTGGATGATGCTTCAAAATTTTTGAATGACAAAGTT ACAAAAGCTGTTGTTACTGTACCTGCTTACTTTAACGACTCTCAAAGGACAGCAACGAAGGATGCTGGCCGAATTGCTGGGCTGGAAGTCCTCCGGATCA TCAATGAGCCTACGGCTGCTTCACTGGCTTATGGATTTGAAAGGAAGAACAACGAGACCATCTTGGTGTTTGATCTTGGCGGTGGGACTTTCGATGTTTC AGTTCTTGAGGTTGGTGATGGAGTCTTTGAAGTGCTATCTACCTCTGGAGATACACATTTGGGTGGCGATGATTTTGACAAGAGAATTGTTGATTGGCTA TCAGCTGACTTCAAGAGCAATGAAGGTATTGATCTTTTGAAGGACAAGCAGGCTCTCCAAAGACTAACTGAGACAGCTGAGAAAGCCAAAATGGAGCTGT CATCTTTGACTCAAGCAAACATCAGTTTGCCATTCATCACCGCAACCGCTGAGGGACCCAAGCACATCGAGACTACTCTTACGAGGGCTAAGTTTGAGGA GTTGTGCTCTGATCTCCTGGATAGGCTCAAAACTCCAGTTGAGAATTCCTTGAGGGATGCCAAACTCACCTTTAAGGACTTGGACGAAGTCATCCTTGTT GGCGGCTCTACGCGTATACCTTCGGTACAACAACTTGTCAAGAAACTCACTGGGAAGGATCCTAATGTCACAGTAAATCCGGATGAAGTTGTTGCTTTGG GCGCCGCAGTTCAGGCCGGGGTTTTGTCGGGCGATGTAAGCGACATTGTGCTGTTGGATGTCACACCGCTATCGATTGGATTGGAGACCCTGGGAGGCGT AATGACAAAGATCATTCCGAGAAACACCACCTTGCCATCATCCAAATCAGAGGTGTTCTCAACTGCTGCTGATGGGCAAACAAGTGTCGAGATCAACGTT CTTCAAGGCGAGAGAGAGTTTGTTAGGGACAACAAGTCTCTGGGAAGCTTCCGCTTGGATGGCATCCCGCCAGCACCGCGTGGGGTCCCACAAATCGAAG TTAAATTCGATATCGACGCTAATGGCATCCTCTCAGTCTCTGCTGCTGATAAGGGCACTGGGAAAAAACAAGACATTACAATCACTGGCGCCAGCACTCT GCCTAGTGATGAGGTTGAGAGGATGGTTCAAGAAGCGGAGAGGTTTTCGAAGGAGGACAAGGAGAAGAGGGAAGCCATTGACACGAAGAACCAAGCTGAT TCTGTTGTTTATCAAACCGAGAAGCAGCTCAAGGAGCTCGGAGACAAAGTTCCAGGCGAGGTGAAAGAAAAGGTTGAGTCTAAATTGCAAGAGCTGAGGG ATGCCATTGCTGGAGGATCAACTCAAACAATGAAAGATGCGATGACCACTCTCAATCAGGAAGTCATGCAACTTGGCCAGTCCCTTTACAACCAACAAGG TTCGGGTGCGGGTGAAGGTCCGACTCCAGGGAACGAATCCGGGCCGTCGTCGTCTTCCGATTCTTCGAGCAAGGGATCCGATGGAGATGTCATTGATGCC GATTTCACGGACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10039044 pacid=23150560 polypeptide=Lus10039044 locus=Lus10039044.g ID=Lus10039044.BGIv1.0 annot-version=v1.0 MASSTAQIHVLGSMGFVSSGSKKPSFSFAPKTVFPGQSLGCSRTAAVLRYNARRRSYSSGRLRVACEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRT TPSVVAYTKNGDRLVGQIAKRQGVVNPENTFFSVKRFIGRKMLEVDEESKQVSYRVVRDDNGNVKLDCPILGKQFAAEEISAQVLRKLVDDASKFLNDKV TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL SADFKSNEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATAEGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLTFKDLDEVILV GGSTRIPSVQQLVKKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPSSKSEVFSTAADGQTSVEINV LQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAADKGTGKKQDITITGASTLPSDEVERMVQEAERFSKEDKEKREAIDTKNQAD SVVYQTEKQLKELGDKVPGEVKEKVESKLQELRDAIAGGSTQTMKDAMTTLNQEVMQLGQSLYNQQGSGAGEGPTPGNESGPSSSSDSSSKGSDGDVIDA DFTDSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	1.0	0.9392
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	2.4	0.8912
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	3.3	0.8500
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	3.5	0.8557
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	6.5	0.8609
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	7.3	0.8536
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	8.5	0.8585
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	9.7	0.8580
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	10.4	0.7791
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	11.1	0.8078

Compare expression of checked genes

Lus10039044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.