Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02870 323 / 1e-110 VTC4 Inositol monophosphatase family protein (.1.2.3) AT1G31190 104 / 3e-25 IMPL1 myo-inositol monophosphatase like 1 (.1) AT4G39120 76 / 4e-15 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT5G09290 47 / 1e-05 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027343 [exp] 398 / 2e-139 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10018305 [exp] 108 / 2e-26 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10040601 [exp] 84 / 8e-18 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10041968 [exp] 81 / 1e-16 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 72 / 7e-14 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011000 [exp] 345 / 4e-119 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 345 / 4e-119 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156300 [exp] 343 / 2e-118 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 341 / 8e-118 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.012G120492 [exp] 107 / 3e-26 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 104 / 4e-25 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.009G120600 [exp] 81 / 9e-17 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.007G105100 [exp] 45 / 5e-05 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 41 / 0.0008 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10039046 pacid=23150283 polypeptide=Lus10039046 locus=Lus10039046.g ID=Lus10039046.BGIv1.0 annot-version=v1.0 ATGGCGGAAAATGATTCGCTCAAAGAGTTCCTGGAGACTGCAGTTGATGCAGCGAAGAAAGCTGGAGAGGTAATCCGCAAAGGGTTCTATCTGACCAAAC AAGTGGAGCATAAAGGCACCGTTGATTTAGTTACAGAAACTGACAAGGCTTGTGAAGATCTTGTTTTCAATCTTCTCAAGGAGAAGTATCCCACCCATAT GTTCATTGGAGAAGAGACAACTGCTGCAAATGGTGTCACCGAGCTGACTGATGAACCAACATGGATTGTGGATCCTCTGGATGGAACCACCAACTTTGTG CATGGGTTTCCCTTTGTTTGCATTTCCATTGGCCTTACAATTGGCAAGGCTCCCAAAGTAGGAGTTGTGTACAATCCAATAATGGAAGAGCTATACACAG CCATCCATGGCCAAGGTGCTTTCTTGAATGGAAAAGCTCTTAAAGAGACGACTGCTGCCAATGGTGTGACTGAGCTGACTGATGAACCAACATGGATTGT GGATCCTCTGGATGGAACAACTAACTTTGTGCATGGGTTTCCCTTTGTTTGCATTTCCATTGGCCTTACAATTGGCAAGGCTCCCAAAGTAGGAGTTGTG TACAATCCAATAATGGAAGAGCTATACACAGCCATCCATGGCCAAGGCGCTTTCTTGAATGGAAAAGCTCTTAAAGTATCTTCTCAACCTGAGCTTGTGA AGGCTCTTCTCGCAACAGAGGTAGGAACGAAACGTGATAAGGCGACTGTGGATCTTACTACTAACAGAATCAACAGCTTGCTATACAAGGTGAGATCCCT CAGGATGAGTGGCTCATGTGCATTGAATCTCTGCGGAGTTGCATCCGGGAGAATTGATTTATTCTATGAAACTGGATATGGTGGCCCCTGGGATGTAGCA GCTGGTGTTCTCCTCGTTGAAGAAGCCGGTGGACATATTTTCGATCTATCTGGTAAAGCATTCGACATTACATCACAGAGAGTTGCAGCGTCGAACTCTC TCCTAAAGGACGCATTCGTTGATGCCTTGGCGCAATCGGACTAA
AA sequence Show only first row Show all	>Lus10039046 pacid=23150283 polypeptide=Lus10039046 locus=Lus10039046.g ID=Lus10039046.BGIv1.0 annot-version=v1.0 MAENDSLKEFLETAVDAAKKAGEVIRKGFYLTKQVEHKGTVDLVTETDKACEDLVFNLLKEKYPTHMFIGEETTAANGVTELTDEPTWIVDPLDGTTNFV HGFPFVCISIGLTIGKAPKVGVVYNPIMEELYTAIHGQGAFLNGKALKETTAANGVTELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKAPKVGVV YNPIMEELYTAIHGQGAFLNGKALKVSSQPELVKALLATEVGTKRDKATVDLTTNRINSLLYKVRSLRMSGSCALNLCGVASGRIDLFYETGYGGPWDVA AGVLLVEEAGGHIFDLSGKAFDITSQRVAASNSLLKDAFVDALAQSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	0	1
AT2G35840			Sucrose-6F-phosphate phosphohy...		Lus10015995 [exp]	4.6	0.7633
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	10.8	0.7630
AT2G41150			unknown protein		Lus10008860 [exp]	11.5	0.7649
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	14.3	0.7610
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10009821 [exp]	16.2	0.7207
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	16.4	0.7587
AT3G28580			P-loop containing nucleoside t...		Lus10004258 [exp]	16.6	0.7014
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	21.2	0.7356
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	24.0	0.7091
AT3G51750			unknown protein		Lus10002202 [exp]	28.4	0.6451

Compare expression of checked genes

Lus10039046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.