Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16490 528 / 0 ARM repeat superfamily protein (.1) AT3G01400 268 / 3e-86 ARM repeat superfamily protein (.1) AT2G23140 263 / 1e-79 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G58680 251 / 1e-79 ARM repeat superfamily protein (.1) AT5G67340 256 / 3e-78 ARM repeat superfamily protein (.1) AT3G54790 228 / 2e-67 ARM repeat superfamily protein (.1.2) AT1G71020 213 / 7e-64 ARM repeat superfamily protein (.1.2) AT3G46510 214 / 1e-62 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 213 / 2e-62 ATPUB14 plant U-box 14 (.1) AT1G23030 209 / 5e-61 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010499 [exp] 565 / 0 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10007738 [exp] 281 / 1e-91 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10014691 [exp] 244 / 2e-78 AT4G16490 195 / 3e-59 ARM repeat superfamily protein (.1) Lus10011514 [exp] 263 / 4e-78 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 261 / 2e-77 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 252 / 4e-76 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 240 / 3e-71 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10038811 [exp] 219 / 1e-70 AT4G16490 160 / 2e-48 ARM repeat superfamily protein (.1) Lus10043471 [exp] 222 / 1e-65 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010800 [exp] 522 / 0 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 501 / 4e-176 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.002G118800 [exp] 263 / 1e-84 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 262 / 2e-84 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 263 / 8e-80 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 260 / 1e-78 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 253 / 2e-76 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 253 / 3e-76 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.009G029600 [exp] 229 / 2e-68 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 228 / 1e-67 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10039047 pacid=23150665 polypeptide=Lus10039047 locus=Lus10039047.g ID=Lus10039047.BGIv1.0 annot-version=v1.0 ATGGTGTCTCTCAACGATTCCCATCCTCACCACCACCACCATTCCACTTCCGGCCGCTTCCCCCTACCTCGCAACGACGGCGAAGCCGTCTCCGTCCAAT CTCCCTCCGGCGCCTCCACCACCAAAATCAGCCGCCAAATCGGCCGCTCCATGCGCACTATCCGCTCCAACCTCTCTCACAACGCCGCCGACGACAACAG CTGCTCTTCCTTCACCACCGCCCACCACTCCTCCTCCTCGACGGCAGTCGTCTCCCATAAGGCGTTCAGCGATTTCTCCGCCTGTAGCAGCGACATCTCC GGCGAGATAGCTCGCCTGGCCAGCTTGCCTTCCCCCAGCCACGGCGGCGACTCATCGACAGAGCCGGAGGAGCAGGAGCCTTGCCTCGGATTTCTGCAGA GGGAGAACTTTTCCACTGAGATAATCGAGAGCATTTCGCCGGAGGATCTCCAACCGGCTGTTAAGATCTGCGTGGACGCTCTCCAGTCGTCTTCTGTAGC AGTGAAGCGATCCGCAGCTGGAAAACTTCGCCTTCTGGCGAAGAATCGGACAGATAACCGAGCTCTGATTGGAGAATCTGGTGCTATTCCGGCTTTAATT CCTCTTCTACGGTCTACTGATCCGTGGACTCAAGAACACGCCGTCACAGCTCTGTTGAATCTCTCCCTCCACGAAGGTAACAAGGATTTGATCACAAACG CCGGAGCAATAAAATCGTTGGTTTACGTACTGAAAACAGGAACGGAAACCTCGAAGCAAAACGCAGCTTGTGCTCTGCTCAGTCTTACTTCCATAGAAGA GAATAAGACCTCGATTGGAGCTTGCGGTGCTATCCCGCCACTGGTTTGTTTGCTAATCAGCGGATCAACTCGAGGTAAGAAAGACGCTCTAACAACACTG TACAAGCTCTGCACGATAAAGCAGAACAAGGAGAGGGCAGTGAGCGCCGGAGCAGTCAAGCCTCTGATAATGATGGTGGGTGAGGAAGGGTCAGGGATGG CAGAGAAAGCCATGGTGATACTGAACAGCCTTGCAGGCGTTGAAGAAGGGAAAGAAGCAATCGTGGAGGAAGGTGGAATTGCTGCTCTAGTGGAAGCCAT TGAAGACGGCTCTTCAAAAGGGAAAGAGTTCTCAGTGCTGATACTGCTCCAATTGTGCTGTGCAAGTGTGAAGAATCGTGGGTTGCTGGTTAGGGAAGGT GGGATTCCTCCTCTTGTCGCACTTTCTCAGAGTGGGACTGTCCGGGCCATGCATAAGGCAGAGACTCTCCTGGTATACTTGAGAGAATCAAGACAAGATT GTTCTTCATCTGCAACTCCTTAA
AA sequence Show only first row Show all	>Lus10039047 pacid=23150665 polypeptide=Lus10039047 locus=Lus10039047.g ID=Lus10039047.BGIv1.0 annot-version=v1.0 MVSLNDSHPHHHHHSTSGRFPLPRNDGEAVSVQSPSGASTTKISRQIGRSMRTIRSNLSHNAADDNSCSSFTTAHHSSSSTAVVSHKAFSDFSACSSDIS GEIARLASLPSPSHGGDSSTEPEEQEPCLGFLQRENFSTEIIESISPEDLQPAVKICVDALQSSSVAVKRSAAGKLRLLAKNRTDNRALIGESGAIPALI PLLRSTDPWTQEHAVTALLNLSLHEGNKDLITNAGAIKSLVYVLKTGTETSKQNAACALLSLTSIEENKTSIGACGAIPPLVCLLISGSTRGKKDALTTL YKLCTIKQNKERAVSAGAVKPLIMMVGEEGSGMAEKAMVILNSLAGVEEGKEAIVEEGGIAALVEAIEDGSSKGKEFSVLILLQLCCASVKNRGLLVREG GIPPLVALSQSGTVRAMHKAETLLVYLRESRQDCSSSATP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Lus10038812 [exp]	1.0	0.8872
AT4G16490			ARM repeat superfamily protein...		Lus10038811 [exp]	1.7	0.8802
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	5.1	0.8852
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	5.9	0.8677
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	9.6	0.8376
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	11.0	0.8768
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	12.4	0.8663
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	15.2	0.8442
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	15.5	0.8566
AT5G63380			AMP-dependent synthetase and l...		Lus10032755 [exp]	16.1	0.8067

Compare expression of checked genes

Lus10039047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.