Plant FIBer expression Database

Lus10039048 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038810
[exp]
340 / 3e-119 AT5G12360 43 / 5e-05 unknown protein
Lus10003273
[exp]
194 / 5e-62 ND 42 / 8e-05
Lus10006544
[exp]
189 / 5e-55 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G101600
[exp]
74 / 8e-16 ND /
Potri.017G113501
[exp]
70 / 1e-14 ND /
Potri.009G072000
[exp]
43 / 4e-05 AT3G14190 105 / 2e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10039048 pacid=23150732 polypeptide=Lus10039048 locus=Lus10039048.g ID=Lus10039048.BGIv1.0 annot-version=v1.0
ATGGCGTCAACAGTGGGCCGTTTGTTCCAAGACAGTAATGTTGTTCAAGAAAACGTCTGGTTGAAGCCCGATGCCTCCAAATCGTCTAAGAAGGGATTAG
GGTTAGGTGGAAGAAAACCGCTGGGTGATTTGTCGAATGCTGCAAAGAATCATTATTTTTCTGCTTCTCTGAACCAAACCTCCAAGAAGGCTCCAGTTGG
TGTGGGGGTCAAAACTTCTGGAAAGCTGCGGGCTAGCCCTAGGAATAGGAAGGTACTTTCTGACATCTCGAATTCAGCTAAGTTACAGAAGCGAAATGAG
GCGTCTAAGGAGACTGTGGTTAAGGGAAAGCTGAGTGTTGTGTCGGAGGAGGAGACATCGGTTGTTGCGTGTGGGATTGAGGAGGAAGGGTTTTCGCATG
ATCATGAGAAATGTATCAAAGCACAGACTCAAGCAACGGATGTCAGTGAGTTCATGAAGATCATCACGATGGAGGATGATTTTCCGATTCAGTTCGGATC
CCCGCCGGCAAGTGCTATGAATAAACGGTTTGAGCCTGACAGTCCAGTGAACTACAAGCTGCAGATCGAAGAGGGAACCTGGGATTTCGAACTTTCTTCT
CCTGCTGGAAAGCATGATTCTTCCCCTTGTTGGAGTCCACCATCATCCCCGGAGTCCAATCTAAGCTGGATGGATCGTGAAGATGATATCTTCAGCCTCA
AGTTGATAGATTCTCCTTAA
AA sequence
>Lus10039048 pacid=23150732 polypeptide=Lus10039048 locus=Lus10039048.g ID=Lus10039048.BGIv1.0 annot-version=v1.0
MASTVGRLFQDSNVVQENVWLKPDASKSSKKGLGLGGRKPLGDLSNAAKNHYFSASLNQTSKKAPVGVGVKTSGKLRASPRNRKVLSDISNSAKLQKRNE
ASKETVVKGKLSVVSEEETSVVACGIEEEGFSHDHEKCIKAQTQATDVSEFMKIITMEDDFPIQFGSPPASAMNKRFEPDSPVNYKLQIEEGTWDFELSS
PAGKHDSSPCWSPPSSPESNLSWMDREDDIFSLKLIDSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12360 unknown protein Lus10039048
[exp]
0 1
AT3G51290 Protein of unknown function (D... Lus10028431
[exp]
2.4 0.9623
AT5G12360 unknown protein Lus10038810
[exp]
2.8 0.9661
AT5G13840 FZR3 FIZZY-related 3 (.1.2) Lus10040282
[exp]
3.2 0.9670
AT4G02800 unknown protein Lus10042577
[exp]
4.5 0.9440
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10001909
[exp]
5.3 0.9512
AT5G07670 RNI-like superfamily protein (... Lus10027218
[exp]
5.5 0.9522
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Lus10011936
[exp]
6.3 0.9508
AT5G59190 subtilase family protein (.1) Lus10009867
[exp]
6.5 0.9329
AT3G01710 TPX2 (targeting protein for Xk... Lus10032115
[exp]
6.7 0.9483
Lus10001684
[exp]
6.9 0.9589

Lus10039048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.