Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 699 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 654 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 593 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 291 / 7e-92 ATINT1 inositol transporter 1 (.1) AT4G36670 139 / 2e-35 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16120 138 / 5e-35 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 133 / 3e-33 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G20780 133 / 5e-33 AtPLT4 Major facilitator superfamily protein (.1) AT5G16150 132 / 9e-33 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G18480 130 / 3e-32 AtPLT3 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038808 [exp] 1033 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 944 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 741 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10017561 [exp] 707 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 705 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10042820 [exp] 578 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10028118 [exp] 577 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017560 [exp] 397 / 3e-136 AT4G16480 281 / 2e-91 inositol transporter 4 (.1) Lus10025565 [exp] 295 / 3e-93 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015300 [exp] 786 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 744 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 729 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 301 / 2e-95 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 286 / 7e-90 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 224 / 5e-69 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 217 / 5e-67 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.006G158700 [exp] 172 / 3e-47 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 149 / 1e-38 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 147 / 3e-38 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10039050 pacid=23150435 polypeptide=Lus10039050 locus=Lus10039050.g ID=Lus10039050.BGIv1.0 annot-version=v1.0 ATGGTGGAAGGAGGTCCTGTAAAAGCAGATAAAACGGAGTTTACAGAATGTTGGAAAATCTCCTCCAAGAATCCTTACATTATGAAGTTGGCCTTCGCGG CCGGCATCGGAGGCCTCCTTTTCGGCTATGACACGGGCGTTATATCAGGGGCGTTGCTATACATAAAAGAAGACTTCCACGAAGTGGACAAGAGCACATT CCTCCAGGAGCTCATCGTGAGCACCTGCGTGGCCGGAGCCATCATCGGAGCGGCCATCGGAGGGTACGCCAACGACAGGTTCGGGAGGAGGAAGACCATC TTGGCGGCCGATGTCCTCTTCTTCATAGGCTCCATAGTCATGGCCATCGCCCCTGTTCCTGCCGTCATCATTATTGGCAGGATCCTTGTCGGTCTAGGAG TCGGAATGGCATCCATGACCGCTCCACTCTACATATCGGAGGCATCTCCGGCCAAGATTCGTGGCGCCATGGTTAGCATGAACGGATTGCTCATCACCGG CGGGCAGTTCTTGTCTTACGTCATCAATCTTGGCTTAACCAAAGTTCCTGGAACTTGGAGGTGGATGCTTGGAGTTGCAGGACTCCCTGCAGTTATCCAG TTCTTCTTGATGTGGTCACTTCCTGAGTCCCCTAGATGGCTTTACAGAGAGAACTATGTGCACGAAGCCAAAGAGATACTCGAAAAGCTATACCCAGAGG AGGAAGTAGAGAGGGAGATTCAAGCACTAAGAGAATCTGTCGAAAACGAGAAGGCAATGGAGGAATCAATCGGCAAGGACATGTTCTCGAAGCTTAAAGG TGCGTTCACCGACAAGGTGGTCCGACGGGGACTGTACGCAGGAGTGACGGTCCAAGTTGCGCAACAATTCGTGGGTATAAACACTGTCATGTACTACTCT CCGACCATAGTCCAGTTTGCAGGGTTCGCTTCGAAATCGGTGGCTCTGGCCCTGTCCCTGATAACGTCGGGGCTGAACGCGGTGGGGTCTATCATCAGCA TGATGGTGGTGGACAGGTACGGGAGGAGGAGGTTGATGTTGATCTCGATGACCGGGATCATAACTTGTCTCGTGGTTCTGGCCATTGTTTTCAACAAGGC GTCGCAGGATGCTCCGATGATCAATCCGATGGATACCAAGCATTTCGGGTTGAATGTAACATGTCCAGCTTACTTGCAGAACTTGCATAAGCCTAAGTGG GGGTGTATGCAGTGCTTGAAGGCTGATTGCTCCTTCTGTTCCAACCCAATCAAACAGGACGCACCAGGGGCATGCCTGATACCGGACAGGTCGATAAGGG AAGTATGCAAATCGGAGCGACGTATCTTATACGAGGAAGGATGTCCGAGCAAGATCGGATTTTTGGCCGTGATCCTATTGGGTCTCTACATCATCTCCTA CTCTCCAGGAATGGGAACCGCGCCATGGATCGTCAACTCAGAGATATACCCGCTTCGCTACAGAGGAGTAGGCGGTGGAATAGCTGCCGTAGCCAACTGG ACGTCGAATTTGATCGTCAGCTTGACTTTCCTGACGATGACGCAGACTCTGACCGTTGCCGGAGCTTTCCTGATGTTCGCGGCGATCTCGTTCGTGATGG CGGTGGCTATCTTCTTTCTGGTGCCGGAGACCAAAGGTTTGCAGTTTGAGGAAGTGGAGAAGCTTCTCAGAGATGGGTTCAAGCCTGATTTGTTTAAGAA GAGATCAGGGGATGATCTAGGCAAAGGCAAATCGCCTGCTTGA
AA sequence Show only first row Show all	>Lus10039050 pacid=23150435 polypeptide=Lus10039050 locus=Lus10039050.g ID=Lus10039050.BGIv1.0 annot-version=v1.0 MVEGGPVKADKTEFTECWKISSKNPYIMKLAFAAGIGGLLFGYDTGVISGALLYIKEDFHEVDKSTFLQELIVSTCVAGAIIGAAIGGYANDRFGRRKTI LAADVLFFIGSIVMAIAPVPAVIIIGRILVGLGVGMASMTAPLYISEASPAKIRGAMVSMNGLLITGGQFLSYVINLGLTKVPGTWRWMLGVAGLPAVIQ FFLMWSLPESPRWLYRENYVHEAKEILEKLYPEEEVEREIQALRESVENEKAMEESIGKDMFSKLKGAFTDKVVRRGLYAGVTVQVAQQFVGINTVMYYS PTIVQFAGFASKSVALALSLITSGLNAVGSIISMMVVDRYGRRRLMLISMTGIITCLVVLAIVFNKASQDAPMINPMDTKHFGLNVTCPAYLQNLHKPKW GCMQCLKADCSFCSNPIKQDAPGACLIPDRSIREVCKSERRILYEEGCPSKIGFLAVILLGLYIISYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVANW TSNLIVSLTFLTMTQTLTVAGAFLMFAAISFVMAVAIFFLVPETKGLQFEEVEKLLRDGFKPDLFKKRSGDDLGKGKSPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	0	1
					Lus10038255 [exp]	3.5	0.7997
					Lus10012012 [exp]	6.2	0.7671
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	10.4	0.7627
AT3G60750			Transketolase (.1.2)		Lus10007839 [exp]	13.0	0.6352
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	16.0	0.7566
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	16.2	0.7609
					Lus10032433 [exp]	20.0	0.7478
AT3G16175			Thioesterase superfamily prote...		Lus10006834 [exp]	21.5	0.6881
AT2G15220			Plant basic secretory protein ...		Lus10013860 [exp]	22.4	0.6311
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	22.8	0.7351

Compare expression of checked genes

Lus10039050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.