Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 401 / 3e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 342 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 342 / 7e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 327 / 6e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 233 / 7e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 229 / 1e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 174 / 6e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 172 / 2e-49 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 160 / 6e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 154 / 3e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038806 [exp] 591 / 0 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 585 / 0 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 528 / 0 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 528 / 0 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 405 / 1e-137 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 400 / 4e-136 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 347 / 9e-115 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 325 / 1e-108 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 245 / 6e-77 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010200 [exp] 474 / 7e-165 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 468 / 7e-163 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 442 / 1e-152 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 440 / 8e-152 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 439 / 1e-151 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 416 / 2e-142 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 251 / 1e-78 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 248 / 2e-77 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 248 / 4e-77 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 241 / 8e-75 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10039053 pacid=23150479 polypeptide=Lus10039053 locus=Lus10039053.g ID=Lus10039053.BGIv1.0 annot-version=v1.0 ATGGCAGGATCTGGAATGGATCTTGGAAAGCTTTTCATTGGCGGAATTTCATGGGACACAAATGAAGACCGGCTTAGAGAGTATTTCCAGGCTTTTGGGG AAGTCTTAGAAGCTGTGATCATGAAGGATCGGTCCACTGGACGTGGCCCTGGTTTTGGATTTGTTGTGTTTGCTGACCCTGCTGTTGCTGAGAGAGTTGT GGTGCAGAAGCATCTCATTGATGGTAGAACTGTTGAGGCGAAGAAAGCAGTACCTAGGGATGATCAGAACAGTCTGAGCAGAAGCAACACAAACAGCATT CAAGGATCTCCTGATCCTGCTAGGACAAAAAAGATTTTTGTAGGAGGTTTAGCGTCCACTGTGACAGACAGTGACTTCAAGAATTATTTCGATCAATTCG GTACAATCACCGATGTTGTGGTTATGTACGACCACAACACACAAAGGCCAAGAGGTTTTGGATTTATTACTTTCGATACTGAGGAAGCTGTGGATAAAGT GCTGCACAAAACATTCCATGAACTCAATGGAAAAATGGTGGAGGTCAAGCGTGCTGTTCCAAAAGAGCTATCCCCTGGGCCAACCAGGAACCAATTAGCT GGATATAATAATGGCATGAGCAGAGTCAATAGTTTCCTGAATGGTTATTCTCAGATTGGAAGTCCTGGACTTAGAATGGACAGCAGATTCAGTCCGATTA CTGCCAGTCGAAGCAGCTTTTCTCCTTTCAATTCTGGTTATGGATCAGGTTTAAATTATGTGCAGGGACTGAGTCCAAGTTACGGTGGTAATGGTAATCT CAGCTCTAACATAGGCTTTGGAAGGTTGAGTCCTTCATTCAGTGGAAGTCCAAGCAGGTACGCTGCCCCCATTGGTTATGGGGCTGGCAATGGGATGAAC AATTCTGTTTCTCGTACATTGTGGAGCAACGATAACATTCTAAACAATTCGAACTCTAACGGTACCAACGCATTTATGAACACTGGAGGTTGGAACTCGG GTCTGGGCTCCTTTTCCAGTTCTGCAGGAGCTCTTTGGGATCTCTCCCCCAACATTGGCCAAGGAGGTGGTAATGGCTCTGTCTATAACAATGGCAGTGG GGACTTTAGTGTTGGTCTAGGAGGAGGAGCAGGTTATGGAAGAAATAGTGGGACAAATTTCGCACCGGGATCATCCCGTGCTGGTGCGAACGGGGGTTAT GAAAATGCTTACGCTGACAACATTTATGAAAACGGTTCGCTTTACGGAGCAGATCCCTCTTGGCGATCTTCTTCAGCTTCTGAGTTGTTTGATTTCGGCA TCGGAAATGCAGCTTCCGATGTTATTACTAAGAATCCCGCTCCTTACGCTGATGGTTATAGCATCGCTGATAGACAGAAGATGTAA
AA sequence Show only first row Show all	>Lus10039053 pacid=23150479 polypeptide=Lus10039053 locus=Lus10039053.g ID=Lus10039053.BGIv1.0 annot-version=v1.0 MAGSGMDLGKLFIGGISWDTNEDRLREYFQAFGEVLEAVIMKDRSTGRGPGFGFVVFADPAVAERVVVQKHLIDGRTVEAKKAVPRDDQNSLSRSNTNSI QGSPDPARTKKIFVGGLASTVTDSDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDTEEAVDKVLHKTFHELNGKMVEVKRAVPKELSPGPTRNQLA GYNNGMSRVNSFLNGYSQIGSPGLRMDSRFSPITASRSSFSPFNSGYGSGLNYVQGLSPSYGGNGNLSSNIGFGRLSPSFSGSPSRYAAPIGYGAGNGMN NSVSRTLWSNDNILNNSNSNGTNAFMNTGGWNSGLGSFSSSAGALWDLSPNIGQGGGNGSVYNNGSGDFSVGLGGGAGYGRNSGTNFAPGSSRAGANGGY ENAYADNIYENGSLYGADPSWRSSSASELFDFGIGNAASDVITKNPAPYADGYSIADRQKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	1.0	0.9274
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	3.0	0.9182
AT1G75140			unknown protein		Lus10007163 [exp]	3.7	0.8810
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	3.7	0.9226
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	7.5	0.8985
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	8.9	0.8972
AT5G52180			unknown protein		Lus10031574 [exp]	9.9	0.8888
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	10.0	0.9079
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	10.0	0.9059
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	10.4	0.8869

Compare expression of checked genes

Lus10039053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.