Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 407 / 7e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 355 / 2e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 343 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 325 / 4e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 235 / 7e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 233 / 5e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 179 / 4e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 175 / 2e-50 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 163 / 4e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 158 / 1e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038806 [exp] 734 / 0 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 711 / 0 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 564 / 0 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 560 / 0 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 412 / 1e-140 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 407 / 1e-138 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 357 / 1e-118 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 327 / 3e-109 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 244 / 8e-77 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010200 [exp] 535 / 0 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 532 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 480 / 9e-168 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 474 / 2e-165 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 447 / 7e-155 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 420 / 4e-144 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 255 / 3e-80 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 250 / 5e-78 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 248 / 1e-77 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 242 / 1e-75 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10039054 pacid=23150415 polypeptide=Lus10039054 locus=Lus10039054.g ID=Lus10039054.BGIv1.0 annot-version=v1.0 ATGGATCTTGGAAAGCTTTTCATTGGTGGAATTTCATGGGACACGAATGAAGACCGTCTTACAGAGTATTTCCAGGCTTTTGGGGAAGTCTTGGAAGCTG TCATAATGAAGGATCGGTCCACTGGACGTGCCCGTGGCTTCGGATTTGTTGTGTTTGCTGACCCTGCTGTTGCTGAGAGAGTTGTGGTGCAGAAGCATCT CATTGATGGCCGAAATGTTGAGGCGAAGAAAGCAGTACCTAGGGATGATCAGAACAGTCTGAGCAGAAGCAACACAAACAGCATTCAGGGATCGCCTGAT CCCGCTAGGACAAAAAAGATTTTCGTAGGAGGTTTAGCGTCCACTGTGACAGACAGTGACTTTAAGAATTACTTCGATCAGTTTGGTACAATCACTGATG TCGTGGTTATGTACGATCACAACACACAAAGGCCAAGAGGTTTTGGATTTATTACTTTCGATACTGAGGAAGCTGTGGATAAAGTGCTGCACAAAACATT CCACGAACTCAATGGAAAAATGGTGGAGGTCAAGCGTGCTGTTCCAAAGGAGCTATCCCCTGGGCCAACCAGGAACCAATTAGCTGGATATAATAATGGC ATGAGCAGAGTCAATAATTTCCTGAATGGTTATTCTCAGATTGGAAGTCCTGGACTTAGAATGGACAGCAGATTCAGTCCAATTACTGGCAATCGAAGCA GCTTTTCGCCTTTCAATTCTGGTTATGGATCAGGTTTAAATTTCGAGCTGGGACAGAGTCCAAGTTATGGTGGCAATGCTAATCTCAGCTCTAACATAGG CTTTGGAAGGTTGAGTCCTTCATACAGTGGAAATCCAAGCAGGTATGGAAACCCCATTGGTTACGGGGCTGGCAATGGGATGAACAATTCTGTTTCTCGT ACATTGTGGAGCAACGATAACATTCTGAACAATTCAAACTCTAACGGTTCCAACGCATTTATGTACGCCGGAGGTTGGAATTCGGGGCTGGGGGGCTCCT TTGGCAGTTCTGGAGGAGCCCTTTGGGATTCGTCCCACAACATTGGCCAAGGAGGTGGTGGTAATGGAAGTGGGGACTTTAGTGTTGGTCTAGGAGGAGG AGCAGGTTATGGAAGAAACAGTGGGACAAATTTTGCACCGGGGCCATCTCGTGCTAGCGCCAACGGGGGTTACGAAAGTTCTTACGCTGACAACGTTTAT GAGAACGGTTCGTTTTACGGAGCAGATCCCTCTTGGCGATCTTCTTCAGCTTCTGAGTTGTTTGATTTCGGAATTGGAAATGCAGCTTCTGATCTAAGTA CTAAGAATTCTGCGCCTTACGGCGGTGGTTATAGCATTGCTGATAGACAGAAGATGTAA
AA sequence Show only first row Show all	>Lus10039054 pacid=23150415 polypeptide=Lus10039054 locus=Lus10039054.g ID=Lus10039054.BGIv1.0 annot-version=v1.0 MDLGKLFIGGISWDTNEDRLTEYFQAFGEVLEAVIMKDRSTGRARGFGFVVFADPAVAERVVVQKHLIDGRNVEAKKAVPRDDQNSLSRSNTNSIQGSPD PARTKKIFVGGLASTVTDSDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDTEEAVDKVLHKTFHELNGKMVEVKRAVPKELSPGPTRNQLAGYNNG MSRVNNFLNGYSQIGSPGLRMDSRFSPITGNRSSFSPFNSGYGSGLNFELGQSPSYGGNANLSSNIGFGRLSPSYSGNPSRYGNPIGYGAGNGMNNSVSR TLWSNDNILNNSNSNGSNAFMYAGGWNSGLGGSFGSSGGALWDSSHNIGQGGGGNGSGDFSVGLGGGAGYGRNSGTNFAPGPSRASANGGYESSYADNVY ENGSFYGADPSWRSSSASELFDFGIGNAASDLSTKNSAPYGGGYSIADRQKM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039054 [exp]	0	1
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	3.5	0.9142
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	4.8	0.9240
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	6.9	0.9094
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	7.7	0.8897
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	9.5	0.9005
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	12.0	0.8854
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	15.0	0.8925
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	16.2	0.8856
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	18.0	0.8899
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	18.5	0.9048

Compare expression of checked genes

Lus10039054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.